Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    29   0.56 
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    29   0.56 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    28   0.97 
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   2.2  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   3.9  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   5.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.8  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 362 PTLMIVSSFTFVSTATPPGDLDASSDRPLMTSIRS 258
           P + ++S+FT +ST     D ++S+ RP   +++S
Sbjct: 509 PKIPLISTFTRLSTRKSSNDFNSSNSRPSSNALKS 543


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 351 DCQFFYVCINGNTPRRSGCKLGQAFDDVNKK 259
           +C F  +CI+G  P+    K  +AF D +K+
Sbjct: 317 ECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 342 FFYVCINGNTPRRSGCKLGQAFDDVNK 262
           F + CING T ++S C L +AF   +K
Sbjct: 275 FCWSCINGWTSKKSECPLCRAFSSPSK 301


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 190 QLRVSQLPFV-PLSTFRNFPG 249
           QL  +QLP   PLSTF +FPG
Sbjct: 221 QLSHAQLPIAEPLSTFSSFPG 241


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 348 CQFFYVCINGNTPRRSGCKLGQAFDDVNKKC 256
           C   Y C  G+ P R+G ++   FD +N +C
Sbjct: 110 CTAIYEC-EGDYPARTGNEIIDEFDQLNLQC 139


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 40  IYLNLNRKLDTYNLFIFYLNCFPFAWALRLPARRTTSRLGFRSRWILEG 186
           +YL  +  +D        + CF FA  LRLP  +T   L +   +++ G
Sbjct: 289 MYLTHHYFVDLVGGMCLAIICFVFAQKLRLPQLQTGKILRWEYEFVIHG 337


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 284  RPLMTSIRSANGPGKFLNVLSGTKGS*LTRSWMPSRIHLLRNPSLL 147
            RPL+  +RS +G G F   L G      T +++ S +    NP LL
Sbjct: 1103 RPLLGHVRSMSGIGFFHTCLMGVFLG--TTTYLLSPVDFANNPLLL 1146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,389
Number of Sequences: 5004
Number of extensions: 47341
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)