Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324G02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127... 29 3.0
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349... 28 4.0
09_06_0127 + 21019266-21019670 28 4.0
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 28 5.2
12_01_0727 + 6446283-6449300 27 6.9
02_05_1320 - 35693575-35694846 27 6.9
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 27 6.9
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512... 27 9.1
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653... 27 9.1
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 27 9.1
>10_08_0102 +
14810293-14811345,14811989-14812108,14812745-14812792,
14812886-14813006,14814073-14814129,14815109-14815217,
14815298-14815523,14815608-14815724,14816041-14816119,
14816303-14816325,14816698-14816742,14816872-14817030
Length = 718
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 375 HPRYADPDDCQFF--YVCINGNTPRRSGCKLGQAFDDVNKKCEWARKVP 235
+P P++ +F ++C++ ++P+ + ++ FDD KK RK P
Sbjct: 57 YPNGNRPENAEFISVFLCLDSSSPKPAMLQVTITFDDEAKKQSQLRKAP 105
>11_06_0032 +
19432305-19432510,19433390-19434326,19434880-19434975,
19435518-19435654,19435888-19436056
Length = 514
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 501 GLVYNDKTGICTWPDEAKKKGCGAAEVFQ 415
G Y + IC PD AK +GC EV +
Sbjct: 110 GSAYGGQRSICCTPDLAKLEGCKQGEVIR 138
>09_06_0127 + 21019266-21019670
Length = 134
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 376 PPPLCRP**L--SVLLRLYQRQHPQEIWMQ 293
PPPL RP +V++R +R+HP+E W Q
Sbjct: 85 PPPLPRPAAAESTVVVREERREHPEEDWEQ 114
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 467 PGLMKPRRRDVALQRYSSSNVRLLMKPSV*PTPAMPTLMIVSSF 336
PG+ PR+R +A+ + + + L + PS PTP+ PT + F
Sbjct: 82 PGIHVPRQRYIAVSKPALLDALLSLFPSQPPTPS-PTSAAAADF 124
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 203 LTRSWMPSRIHLLRNPSLLVVLRAGSRNAQAKGKQF 96
+++ W+PS LL N + L VLR G N + G+++
Sbjct: 187 ISQLWVPSLETLLTNLTRLEVLRLGMVNLSSNGERW 222
>02_05_1320 - 35693575-35694846
Length = 423
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 279 FDDVNKKCEWARKVPECAEWYKGQLTDAELDALENXXXXXXXPAGSPSRRKP 124
FD++ K + + C E KG L A+ A + AG R KP
Sbjct: 205 FDEMPSKADVEPDIVSCNEILKGYLNAADYAAFDQFLKDNTTAAGGKRRLKP 256
>02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 27.5 bits (58), Expect = 6.9
Identities = 24/99 (24%), Positives = 38/99 (38%)
Frame = +1
Query: 85 IFYLNCFPFAWALRLPARRTTSRLGFRSRWILEGIQLRVSQLPFVPLSTFRNFPGPFALL 264
+ +L F+ + PARR +SRL R G Q L F P P ++
Sbjct: 813 VIFLGSRQFSPIIYSPARRASSRLSRREVIAFAGQQSWDIGRFVRTLYFFNGPPNPLKIV 872
Query: 265 IDVIKGLSELASRSPGGVAVDTNVKELTIIRVGIAGVGQ 381
+ LS +PG V ++ ++ GVG+
Sbjct: 873 ESI---LSSFTGSAPGEVPKKMESSDVVLVTGATGGVGR 908
>07_03_0284 +
16249497-16249993,16250950-16251069,16251166-16251298,
16251867-16252031,16253289-16253459
Length = 361
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 326 STATPPGDLDASSDRPLMTS----IRSANGPGKFLNVLSGTKGS*LTRSWMPSRIHLLRN 159
S A+PP DAS PL+ S R + G G +L G +G+ SR L+R
Sbjct: 3 SAASPPRSGDASPSSPLLPSPTSPDRRSGGGGGGGRLLPGLRGAARFLGRTGSR-RLMRE 61
Query: 158 PSLLV 144
PS+ V
Sbjct: 62 PSVAV 66
>02_05_0670 -
30764007-30764135,30764404-30764548,30765200-30765309,
30765578-30765761,30765857-30765969,30766242-30766412,
30766493-30766756,30767537-30767782
Length = 453
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = -3
Query: 354 DDCQFFYVCINGNTPRRSGCKLGQAFDDVNKKCEWARKVPECAEWYK 214
D + + C +G R+ G +GQ D + + C W + W K
Sbjct: 171 DALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINEKATVPVWAK 217
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 504 DGLVYNDKTGICTWPDEAKKKGC-GAAEVFQFECPAVNETF--GLTH 373
DGL+ K G W D A K+ C G V + A+ + F GL H
Sbjct: 184 DGLLDKLKNGPLFWIDTADKQPCIGTGGVITWHLKAIGKLFHSGLAH 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,219
Number of Sequences: 37544
Number of extensions: 359532
Number of successful extensions: 994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -