Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324G01f
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 107 5e-25
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 107 7e-25
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.041
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 31 0.071
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 0.88
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 1.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 2.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 3.5
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 4.7
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 4.7
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 24 6.2
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 24 8.2
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 24 8.2
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 107 bits (257), Expect = 5e-25
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Frame = +1
Query: 64 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 243
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 244 RVISSIEQKTE--GSERKQQMAKEYRVKVERSSEKL 345
R++SSIEQK E G+ + ++ KEYR K+E+ + +
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTI 98
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 107 bits (256), Expect = 7e-25
Identities = 55/91 (60%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Frame = +1
Query: 61 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 240
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 241 WRVISSIEQKTE--GSERKQQMAKEYRVKVE 327
WR+ISSIEQK E G+ R+ + KEYR K+E
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIE 91
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.041
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 234
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 235 SSWRVIS 255
S+W S
Sbjct: 62 STWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.7 bits (66), Expect = 0.071
Identities = 24/102 (23%), Positives = 43/102 (42%)
Frame = +1
Query: 37 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 216
I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 217 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVERSSEK 342
+R+ + +E+ + EY +E++ +K
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKK 3098
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 0.88
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 283 ERKQQMAKEYRVKVERSSEKLS 348
E++Q A +YR+KVER K+S
Sbjct: 85 EQEQNEANDYRLKVERLEHKIS 106
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 211 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 327
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 2.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 8 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 130
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 23 KGISELVLFHRPRCPSTRKNWCNVPNW 103
+G+ + L RC +T CNVP W
Sbjct: 694 EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 4.7
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 151 VTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVER 330
+ + GVE + N+L ++ V SSWR K E SE + + AK ++++
Sbjct: 381 IQDDGVEQLMQPENILKISSDIVTQGSESSWRA------KAETSEMQLKEAKRLFYELKQ 434
Query: 331 SSEKL 345
+ L
Sbjct: 435 IHQAL 439
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 4.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 260 LNRKPRVQKENSKWQKNIGLK*KGAQRNCR 349
L R+ R QKE S W+ ++ + K +N R
Sbjct: 201 LRREERKQKEGSSWRLDLNTRDKILDKNNR 230
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.2 bits (50), Expect = 6.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 127 DMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 252
D+A ++K E ++ +E + SV +K++VG + ++ I
Sbjct: 631 DLAESVKSSAEASAKIVSEIIQVPSVYHKHIVGPKGTTLNAI 672
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 37 ISSLPSSTMSVDKEELVQRAKL 102
I SLP+S + K+E +Q++KL
Sbjct: 329 IESLPASLKQLIKDEYLQKSKL 350
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 8.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 202 VAYKNVVGARRSSWRVISSIEQKTEGSERKQQ 297
+ Y ++ + +R++S+ EQ+ E +RK Q
Sbjct: 142 IKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQ 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.125 0.337
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,703
Number of Sequences: 5004
Number of extensions: 24171
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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