Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.8  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   9.0  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 355 LHLYFCYILHNPSIVYIPAV 414
           +HL+     H PSI+YIP +
Sbjct: 652 IHLFLEVRRHTPSIIYIPDI 671


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 177 YNT*H*VKYRTFNAVFYIKISNKSNTLLFYLKI 275
           YN+ H V     N +F + IS+  +  LFY K+
Sbjct: 276 YNSHHAVSLLALNGLFTLMISHNLDYPLFYPKL 308


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 298 ECFNMYHDINDYFLCLKRKLHLYFCYILHNPSIVYIPAV 414
           E F   HD++  FL       +YF   LH+PSI+ + A+
Sbjct: 189 EKFYECHDLSKKFLIETLHSDIYF---LHSPSIIALGAI 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,945
Number of Sequences: 5004
Number of extensions: 35204
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)