Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-6|CAA92792.1|  335|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z68493-6|CAA92792.1|  335|Caenorhabditis elegans Hypothetical
           protein C33A12.8 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 257 VILPKNFTSFRHNLNVLICIMT*MIIFYVLRESYIFTSVIFFIILV*CTYLPLSDKIKVL 436
           V L K   S++  L++ I  +  MIIFYV+   +I   ++F+      +Y  L   IK  
Sbjct: 240 VSLQKQSVSYKAELSITITTIV-MIIFYVINGGFILMYLLFYGT---NSYFSLLVVIKPF 295

Query: 437 CKDL-SCVDGTIEY 475
             DL +CV   I Y
Sbjct: 296 ANDLQTCVVPWIFY 309


>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 326 MIIFYVLRESYIFTSVIFFI--ILV*CTYLPLSDKIKVLCKDLSCVDG 463
           ++IFY  + S + T   FF+  +     Y     K++ +C+++ C DG
Sbjct: 97  LLIFYNFQNSPLTTYFAFFVSNVTTAMFYFAFIWKMQPMCREMKCYDG 144


>Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical
           protein T05C12.2 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 ESYIFTSVIFFIILV*CTYLPLSDKIKVLCKDLSC 454
           E+ +  SVIFF+ +V  T  P S  + +L    SC
Sbjct: 293 ETTVLLSVIFFLQMVSSTSPPQSQSVPILAAFFSC 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,032,555
Number of Sequences: 27780
Number of extensions: 191014
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)