Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.27 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 152 ENRANIHII*HVTLSKIPNIQR 217
           ENR+N+H+I + T++K+  + +
Sbjct: 274 ENRSNLHVIVNATVTKVRTLNK 295


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 253 VLLLFDILM*KTALNVRYFT*CYVLY 176
           + +LF  L  +T L   YF   Y++Y
Sbjct: 22  LFVLFSFLRTRTKLQPTYFHHTYIIY 47


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 253 VLLLFDILM*KTALNVRYFT*CYVLY 176
           + +LF  L  +T L   YF   Y++Y
Sbjct: 22  LFVLFSFLRTRTKLQPTYFHHTYIIY 47


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 322 INDYFLCLKRKLHLYFCYILHNPSIVYIPAVK 417
           +ND  L ++  L L F  IL + + VY+   K
Sbjct: 248 LNDILLTVRPHLELTFENILSHINTVYVLRTK 279


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 84  YG*YLNKSIKYTIKYTKFSL 143
           +G  LNKS+KY+ K    SL
Sbjct: 504 FGHPLNKSLKYSDKERDLSL 523


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 322 INDYFLCLKRKLHLYFCYILHNPSIVYIPAVK 417
           +ND  L ++  L L F  IL + + VY+   K
Sbjct: 248 LNDILLTVRPHLELTFENILSHINTVYVLRTK 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,280
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)