Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324F10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 164 6e-42
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.2
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 26 3.9
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 6.8
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 6.8
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 25 9.0
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 164 bits (399), Expect = 6e-42
Identities = 76/147 (51%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +3
Query: 15 GAKTVVPGKVIGKFSVRLVPNQEPEEVEKLVFDYINKKWAERGSPNKMSIT-AQSGRAWT 191
GAKTV+P KVIGKFS+R VPN E E VE+LV +++ K + S NK++ SG W
Sbjct: 326 GAKTVIPAKVIGKFSIRTVPNMESETVERLVKEHVTKVFNSLNSKNKLAFNNMHSGSWWI 385
Query: 192 ENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASGKNVLLLPMGAGDDMAHS 371
+PDH HY +AT+ +Y PD REGGSIPVT+T +++ KNVLLLPMG GDD AHS
Sbjct: 386 SSPDHWHYDVGKKATERVYGITPDFVREGGSIPVTVTFEQSLKKNVLLLPMGRGDDGAHS 445
Query: 372 QNEKINVRNYIEGIKLFAAYLFEVGKL 452
NEK+++ N+++GIKLF Y+ E+ +
Sbjct: 446 INEKLDLDNFLKGIKLFCTYVHELASV 472
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 75 NQEPEEVEKLVFDYINKKWAERGSPNKMSITAQSG 179
NQ+ E KL D + WAE S N+ + +QSG
Sbjct: 73 NQKVVEASKLDLDATSTVWAESLSINREASISQSG 107
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 48 GKFSVRLVPNQEPEEVEKLVFDYINKKWAERGSPNKMSITAQSGRAWT 191
G+ ++ P ++V DY N K AER S + +G WT
Sbjct: 41 GRLESQIAKLSVPPHEMRVVDDYSNSKNAERHSGEIQAYAKFAGSTWT 88
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = +3
Query: 3 AFQPGAKTVVPGKVIGKFSVRLVPNQEPEEVEKLVFDYINKKWAERGSPNKMSITA 170
+ P K ++PG VIG F L+ P+++ ++DY +++ ++GS ++ + A
Sbjct: 20 SLHPEQKDLIPGSVIGPF---LLKFGLPQKILAKIWDYCDQE--DKGSLDRNQVYA 70
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 84 PEEVEKLVFDYINKKWAERGSPNKMSITAQS 176
PE +E V +I +K + R +PN +I S
Sbjct: 130 PESIENPVLSFITRKGSSRHAPNNSNIQPPS 160
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 6 FQPGAKTVVPGKVIGKFSVRLVPNQEPEEVEKLVFD-YINK 125
F KTV+P K+I S+ ++ E E+ FD Y++K
Sbjct: 349 FTRSIKTVIPNKLISNESISILSIPESEKTIYQNFDLYVSK 389
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/23 (52%), Positives = 20/23 (86%), Gaps = 2/23 (8%)
Frame = +3
Query: 66 LVPNQE-PEE-VEKLVFDYINKK 128
LVPN++ P+E + KL+FD++N+K
Sbjct: 260 LVPNEKNPKEYILKLLFDHLNRK 282
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 24 TVVPGKVIGKFSVRL-VPNQEPEEVEKLVFDYINKKWAERGSP 149
T + G +G +R + ++P E EK ++ Y + W E P
Sbjct: 36 TPLKGCSVGTILIRSPILTRQPSEFEKSIYKYNAELWNELSDP 78
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 400 TSKA*NCLPPTCSRSVNSPSK 462
TS+A N LPPT S +PSK
Sbjct: 19 TSRANNSLPPTPDSSPAAPSK 39
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 285 SNLLRGTCPDRSDISA*W 232
S+LL+GTC D+S W
Sbjct: 320 SSLLKGTCSTSGDVSISW 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,778
Number of Sequences: 5004
Number of extensions: 35312
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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