Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324F10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 29 3.0
02_05_1245 + 35223504-35224778 28 4.0
02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671... 28 4.0
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 5.2
11_06_0579 - 25181389-25182289,25182556-25182584 27 6.9
07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552 27 6.9
07_01_0072 - 525351-525494,526029-526256,526345-526458,527616-52... 27 9.1
03_02_0459 + 8649448-8651994 27 9.1
01_07_0092 - 41021743-41022276 27 9.1
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 135 ERGSPNKMSITAQSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEA 314
ER + + + A + W+ HPH + AA ++ + + GS TI + A
Sbjct: 659 ERQNNTRNNSDASTSSLWSREDLHPHLEVAAIVIQVPFHKTQSKELKDGSSSGTIKVAAA 718
Query: 315 SGKNVL 332
G + L
Sbjct: 719 GGAHGL 724
>02_05_1245 + 35223504-35224778
Length = 424
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +3
Query: 72 PNQEPEEVEKLVFDYINKKWAERGSPNKMSITAQSGRAWTENPDHPHYQAAARATKLIYQ 251
PN EPEE EK + ++ + S S+ A + A T +Q + RAT Y
Sbjct: 11 PNPEPEEKEK-EEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYS 69
Query: 252 TDPDMS 269
T S
Sbjct: 70 TTSSSS 75
>02_03_0097 +
15166077-15166349,15166623-15166694,15166715-15167161,
15167579-15167794,15167873-15168213,15168329-15168947
Length = 655
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 14 WSKNGGSWKSDWKIFSQACSESRAGGS*EISL*LHQQEVGGARFPEQDEH 163
W +G +D+K+F Q E+ GG + +V G FP H
Sbjct: 200 WHNSGSHTTNDYKVFRQQIQEAIEGGKIKFDDTKRPMKVDGNHFPVNMVH 249
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +2
Query: 146 PEQDEHHGTER---PRL--DREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSAG 310
P + + GT R P DR PG +ALP H SD PR R D H G
Sbjct: 225 PSNERYDGTRRYASPSYGRDRSPGGNALPANGRSHNL-TSDGMNPSPRERDDQNGSHRRG 283
>11_06_0579 - 25181389-25182289,25182556-25182584
Length = 309
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 72 PNQEPEEVEKLVFDYINKKWAERGSPNKMSITAQSGRAWTE 194
P + +V++L+ D + K WA S NK+ +T G W +
Sbjct: 62 PVKVSTDVKRLILDKMLKIWATSTSANKLDLTRFHGE-WAQ 101
>07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552
Length = 306
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -2
Query: 388 LIFSF*ECAMSSPAPMGNSNTFLPLASCRVIVTGIEPPSRDMSGSV*YISLVARAAAW 215
L+F+F + + +P P+G + + LA+ + TGI P+R + +V Y + A + W
Sbjct: 215 LLFNFDKSKVLAPLPIGFAVFMVHLATIPITGTGIN-PARSLGVAVVYNNNKAWSDQW 271
>07_01_0072 -
525351-525494,526029-526256,526345-526458,527616-527747,
529086-529265,529376-529507,529879-530055,530536-530718,
530894-530938,531192-531306,531770-532128,532700-532939
Length = 682
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 344 HGQQQHVLAARLLQSDRDGDRTSFAGHVRIG 252
H QQQ +L +++ D D D GH R G
Sbjct: 47 HPQQQQLLRHQVVDDDDDEDDVRSEGHARSG 77
>03_02_0459 + 8649448-8651994
Length = 848
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 102 LVFDYINKKWAERGSPNKMSITAQSGRAWTENPDH 206
L+ D+I A G+P+ S A + AW +P H
Sbjct: 138 LLDDHIKPLGAAGGAPSSSSRAAAAAPAWATSPSH 172
>01_07_0092 - 41021743-41022276
Length = 177
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 114 YINKKWAERGSPNKMSITAQSGRAWTENPDHPHYQAAARA 233
Y+NK G + T++SG PDHP ++A A
Sbjct: 117 YLNKYRELEGDRAAAAATSRSGAGAAAGPDHPSSSSSAAA 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,308
Number of Sequences: 37544
Number of extensions: 312623
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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