Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324F10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 177 4e-45
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 169 1e-42
Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 29 1.5
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 29 2.0
Z74030-12|CAA98434.1| 320|Caenorhabditis elegans Hypothetical p... 28 3.5
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 4.7
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 27 8.1
U28730-6|AAO38620.1| 203|Caenorhabditis elegans Hypothetical pr... 27 8.1
U28730-5|AAA68259.1| 470|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 27 8.1
AC006693-10|AAF60376.1| 578|Caenorhabditis elegans Hypothetical... 27 8.1
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 177 bits (431), Expect = 4e-45
Identities = 79/148 (53%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
Frame = +3
Query: 6 FQPGAKTVVPGKVIGKFSVRLVPNQEPEEVEKLVFDYINKKWAERGSPNKMSIT-AQSGR 182
+ PG KTV+P KVIGKFS+R+VP+ +PE+V +L +Y+NK WAERGSPN S +
Sbjct: 324 YGPGEKTVIPSKVIGKFSIRIVPDMDPEQVNRLTVEYLNKVWAERGSPNVFKPRPGHSAK 383
Query: 183 AWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASGKNVLLLPMGAGDDM 362
W + + ++ A ARA K ++ +PD REG SIP+T+T QE +GK+VLLLP+GA DDM
Sbjct: 384 PWVVDVNDSNFLAGARAMKRVHGVEPDRIREGCSIPITLTFQELTGKSVLLLPIGAADDM 443
Query: 363 AHSQNEKINVRNYIEGIKLFAAYLFEVG 446
AHSQNEK N+ NY+EG+K AY+ E+G
Sbjct: 444 AHSQNEKNNIWNYVEGVKTLLAYIMELG 471
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 169 bits (411), Expect = 1e-42
Identities = 76/146 (52%), Positives = 106/146 (72%), Gaps = 1/146 (0%)
Frame = +3
Query: 9 QPGAKTVVPGKVIGKFSVRLVPNQEPEEVEKLVFDYINKKWAERGSPNKMSITA-QSGRA 185
QPGAKTV+P KV+GKFS+R+VP+ PE +KLV Y++ WA+R SPN +T+ G
Sbjct: 324 QPGAKTVIPAKVVGKFSLRIVPHMTPEATDKLVNSYLDSLWAKRKSPNTFKVTSGHGGMP 383
Query: 186 WTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASGKNVLLLPMGAGDDMA 365
W + ++ A +RA + +Y PD +REGGSIPVT+T+Q+ + V+LLP+GA DDMA
Sbjct: 384 WVADFRDANFSAGSRAIERVYGMTPDFTREGGSIPVTLTIQDLTKSPVMLLPIGASDDMA 443
Query: 366 HSQNEKINVRNYIEGIKLFAAYLFEV 443
HSQNEKIN N+++G+K+ AAYLFE+
Sbjct: 444 HSQNEKINRDNFVKGMKVLAAYLFEL 469
>Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical
protein C10C5.4 protein.
Length = 397
Score = 29.9 bits (64), Expect = 1.2
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Frame = +3
Query: 27 VVPGKVIGKFSVRLVPNQEPEEVEKLVFDYINKKWAERGSPNKMSITAQSGRAWTENPDH 206
V+P K +RL PNQ+ E+ + ++ K A G + S + D
Sbjct: 260 VIPEKFEAYVDIRLTPNQDFGEIRAKLDQWV--KDAGEGVTYEFSQHSDYKPVSPHTRDD 317
Query: 207 PHYQAAARATKLIYQTDPDMSRE--GGSIPVTITLQEASGKNVLLLPMGAGDDMAHSQNE 380
P + A + K Q + + + E GS +++A + PM AH+ NE
Sbjct: 318 PFWAAFEDSLK---QENCEFTTEVCVGSTDSRF-VRKAGVPAINFSPMINTPVRAHAHNE 373
Query: 381 KINVRNYIEGIKLFAAYLFEVGKL 452
+N + ++ G+++F + +G +
Sbjct: 374 FLNEKVFLRGVEIFETLINNLGNV 397
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2
Query: 176 RPRLDREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSAGGERQE 325
R DR P PS PGR R ISDR G F + +RQ+
Sbjct: 186 RMSFDRSPSPSRAPGRGSR----ISDRGGDYRDSGFSSQQSADPRSDRQD 231
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 114 YINKKWAERGSPNKMSITAQ--SGRAWTENPDHPHYQAAARATKLIY 248
Y N +WA G PN + I Q G +W N P +A + +Y
Sbjct: 570 YKNSQWARPGGPNFLMIGGQEAEGESWVLNEKLPWLISAQKYGATVY 616
>Z74030-12|CAA98434.1| 320|Caenorhabditis elegans Hypothetical
protein D1054.14 protein.
Length = 320
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 119 QQEVGGARFPEQDEHHGTERPRLDREPGPSAL-PGRRPRH*ADISDRSGHVPRRRFDPRH 295
+++VG R + E R R D EPGPS+ GRR DR R R D R
Sbjct: 221 ERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRD 280
Query: 296 D 298
D
Sbjct: 281 D 281
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/58 (37%), Positives = 24/58 (41%)
Frame = +2
Query: 134 GARFPEQDEHHGTERPRLDREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSA 307
GAR + P R P PS P RR R DRSG RRR PR +A
Sbjct: 76 GARADRDRPMRPSPSPPRRRRPSPS--PPRRDRR-----DRSGSRQRRRASPRRSPAA 126
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 116 HQQEVGGA----RFPEQDEHHGT-ERPRLDREPGPSALPGRRPRH 235
H + + GA RF E DE GT + + PGPS PGR RH
Sbjct: 77 HTRSIRGAKPRRRFDE-DETTGTCDGCCIPGAPGPSGTPGRHGRH 120
>U28730-6|AAO38620.1| 203|Caenorhabditis elegans Hypothetical
protein K10B2.2b protein.
Length = 203
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 57 SVRLVPNQEPEEVEKLVFDYINKK 128
S VP +P+E ++++F++IN K
Sbjct: 172 SGHFVPEDKPKESQQMIFNFINNK 195
>U28730-5|AAA68259.1| 470|Caenorhabditis elegans Hypothetical
protein K10B2.2a protein.
Length = 470
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 57 SVRLVPNQEPEEVEKLVFDYINKK 128
S VP +P+E ++++F++IN K
Sbjct: 439 SGHFVPEDKPKESQQMIFNFINNK 462
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +2
Query: 146 PEQDEHHGTERPRLDREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSA 307
PE+ E E+P +EP P+ +P + + P+ + D R A
Sbjct: 133 PEKKEEAKPEKPAEPKEPEPAQKQAEQPEQAEEKQETKDAEPKEQVDDRQTEEA 186
>AC006693-10|AAF60376.1| 578|Caenorhabditis elegans Hypothetical
protein W02H5.8 protein.
Length = 578
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 496 IVSTCSILGVRVYLGSLPTSNK 431
+VS+ LGV +Y GSLP N+
Sbjct: 182 VVSSMGTLGVSLYTGSLPGKNR 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,248,938
Number of Sequences: 27780
Number of extensions: 221000
Number of successful extensions: 641
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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