Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   5.2  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    25   6.8  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   9.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.0  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   9.0  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 243 HFFRALSSILIHIHSDAKIKFVKNYN 320
           HF +   SIL +++ D    F K YN
Sbjct: 210 HFAKEFESILRYLYLDTNAVFTKQYN 235


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 217 HGYFLTIYIIFFGHYLV 267
           HG ++ +++I FG Y+V
Sbjct: 12  HGVYIPVFLIIFGTYIV 28


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 11  TFPLSLCQTERVLSAAYLTSRSFHVTPID*MSLTLLDAT 127
           T+PL + +T   +  A LTSRS  +  +   SL +   T
Sbjct: 133 TYPLDIARTRLSIETAGLTSRSLAINNVANNSLKVKPLT 171


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 394 YRQTEPQRYKYAALCRGVRTL*RQAL*FFTNFIL 293
           Y ++ P+   +  LCR + +  +Q + FFT  +L
Sbjct: 64  YSESMPRTIPFTILCRKLASTLKQRVIFFTRVLL 97


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 189 RFLNTFKCSHCYQKAL*FGECVASR 115
           RF NT +  HC+Q  + +  C+ ++
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAK 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,621
Number of Sequences: 5004
Number of extensions: 30948
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)