Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F07f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209038-1|BAD92275.1|  100|Homo sapiens ubiquitin carboxyl-term...    30   5.7  
U28727-1|AAC50543.1| 1627|Homo sapiens pregnancy-associated plas...    29   7.5  

>AB209038-1|BAD92275.1|  100|Homo sapiens ubiquitin
           carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
           variant protein.
          Length = 100

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 8   PGYPRATRPPQHVAGVAWA-RCDGRRRPATSLG 103
           P  PR  RPP   AG   A RC+ RRRP   +G
Sbjct: 59  PRAPRRGRPPVPAAGRDQAARCEHRRRPGWGVG 91


>U28727-1|AAC50543.1| 1627|Homo sapiens pregnancy-associated plasma
           protein-A preproform protein.
          Length = 1627

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 17  PRATRPPQHVAGVAWARCDGRRRP-ATSLGLWTGRATDVTRLDDSRPDKRA 166
           PRA RPP+  AG A     G R P   +     GRA +  R+   R  + A
Sbjct: 32  PRAGRPPRPAAGPATCATRGPRPPRLAAAAAAAGRAWEAVRVPRRRQQREA 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,814,688
Number of Sequences: 237096
Number of extensions: 1375401
Number of successful extensions: 3498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3496
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)