Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324F06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 157 9e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 73 3e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 73 3e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 2e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 2e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 2e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 2e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 4e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.97
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 6.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 9.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 9.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 157 bits (381), Expect = 9e-40
Identities = 71/78 (91%), Positives = 76/78 (97%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 333
V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 332 SKQEYDESGPSIVHRKCF 279
SKQEYDESGP IV+RKCF
Sbjct: 358 SKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 72.9 bits (171), Expect = 3e-14
Identities = 33/78 (42%), Positives = 55/78 (70%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 333
VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I
Sbjct: 303 VLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362
Query: 332 SKQEYDESGPSIVHRKCF 279
+ +EY ++ +++ R+ F
Sbjct: 363 TSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 6/83 (7%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 342
++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q
Sbjct: 351 IVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQ 409
Query: 341 MWISKQEYDESGP---SIVHRKC 282
+WIS+QEY+E G +++ ++C
Sbjct: 410 LWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 69.7 bits (163), Expect = 2e-13
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQM 339
V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +
Sbjct: 348 VVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHL 407
Query: 338 WISKQEYDESG 306
W+SKQEYDE G
Sbjct: 408 WVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 56.4 bits (130), Expect = 2e-09
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 366
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 365 AS-LSTFQQMWISKQEYDESG 306
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 333
V GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I
Sbjct: 324 VTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKI 382
Query: 332 SKQEYDESGPSIVHRK 285
++ EY E G +I+ RK
Sbjct: 383 TRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 43.2 bits (97), Expect = 2e-05
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGG 375
VLSGG+T++ +R+Q+++ + + + +I+ ++ +VW GG
Sbjct: 331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390
Query: 374 SILASLSTFQQMWISKQEYDESGPSIVHR 288
S+LA F +K +Y+E G SI R
Sbjct: 391 SLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 333
+++GG PG+ R+++E+T++ P I + W G S + F+ +
Sbjct: 639 LITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKV 698
Query: 332 SKQEYDESGPSIV 294
+++EY E GP +
Sbjct: 699 TREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -1
Query: 512 VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQ 342
++ GG +PG A +++ I + + I +I PP + ++ W G I + +
Sbjct: 534 LIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSE 593
Query: 341 MWISKQEYDESGPSIVHRK 285
+WI ++ G ++ K
Sbjct: 594 LWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 386 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 285
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 461 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 351
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 394 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 299
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 388 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 302
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 327 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 413
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 388 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 302
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 355 LPSNKCGSRNKSTTSLAPPLYTGSAS 278
+P + STT + PPL T S+S
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS 56
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 359 LSTFQQMWISKQEYDESGPSIV 294
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 405 WRSNDLNLHCRWGESCD 455
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 391 PYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQ 224
P SVD S+PPS P S + S P SA+ A Q A G + Q
Sbjct: 49 PPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQ 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,459
Number of Sequences: 5004
Number of extensions: 38565
Number of successful extensions: 129
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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