Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324F03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.32
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 3.0
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.8
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 6.8
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 9.0
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 9.0
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 9.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.0
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +2
Query: 62 EKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSTGPTKPNEPTK 241
E + SKL + ++ G H T +A +N L + +N ++S+ TK +E K
Sbjct: 703 EALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSELTKSSEDVK 762
Query: 242 KGETKKSFLSNTGKAIQST 298
+ L+ KA++ +
Sbjct: 763 RLTANVETLTQDSKAMKQS 781
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 202 YFAHVFYIMQRLPGNIFHG 146
Y HV ++QR PG +F G
Sbjct: 428 YAGHVVAVLQRAPGQVFSG 446
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 199 SSLNRPHKTK*TNKKRGNQEIFSIKYWESHSKHTIT*SVHP 321
S+L +P+K++ Q FS K + SH+KH + S P
Sbjct: 51 STLIQPNKSQSVTSPYVKQFTFSSKEYNSHNKHALQNSQLP 91
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 137 TRQAVKNVSRQPL--HNIENMGKVVSTGPTKPNEPTKKGETKKSFLSN 274
T + KN + Q + H + K GP KP E G+T SF +
Sbjct: 370 TNVSTKNRNNQTVGEHPYVDDNKKKKKGPAKPKEKATLGKTVNSFFGS 417
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 257 KSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTDED 364
K+F+S I TP RKV A ++ + DED
Sbjct: 1589 KNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADED 1624
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 149 VKNVSRQPLHNIENMGKVVSTGPTKPNEPTKKGET 253
VK S +PL + + + T TKP EP K ET
Sbjct: 129 VKEKSEKPLETSQKVE--IETVETKPGEPEVKQET 161
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/93 (19%), Positives = 37/93 (39%)
Frame = +2
Query: 47 NNDDIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSTGPTKP 226
++D+IE I L K T ++ D+L + KN+ Q E++ K + P K
Sbjct: 398 DDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQ-----EDLKKGIVRQPRKR 452
Query: 227 NEPTKKGETKKSFLSNTGKAIQSTPSRKVFTPR 325
+ T ++ + ++ F+ +
Sbjct: 453 RRYRPRDSTSDGIADTAAESAKEMMQQRAFSKK 485
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 339 VLSYTLMRMVIKDVHLKKLSSPNLSTMIIIKEIYLTL 449
+ S+ + MVI+++HL SS + I+ ++ LTL
Sbjct: 551 IASFKKVTMVIENIHLADESSLIILQKIVYSDLPLTL 587
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +2
Query: 215 PTKPNEPTKKGETKKSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTDEDGDK 373
P + + G+ SFL G TP ++ G + Y+DE G K
Sbjct: 101 PLRSGTRVQIGQISFSFLLPEGSEEDGHLKETGITPLSLQQGKIAYSDEFGGK 153
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 161 SRQPLHNIENMGKVVSTGPTKPNE-PTKKGETKKSFLSNTGKAIQSTPSRKVFTPRAVNV 337
S QP+++ ++ + +S GPT N P + L + S P+ + P + +
Sbjct: 343 SEQPMYSTASVPQQISNGPTAVNGLPMNSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSS 402
Query: 338 GSLIYTD 358
S+ + +
Sbjct: 403 PSMAHAN 409
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 92 DLATMSLFD-IFGDHLTRQAVKNVSRQPLHNIENMGK 199
D +++ LF + DH T +K V +Q + +E MG+
Sbjct: 33 DASSLHLFTPTWRDHATNTIIKFVPQQVAYVVERMGR 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,710
Number of Sequences: 5004
Number of extensions: 41658
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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