Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324F03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22832-2|AAA64509.2| 571|Caenorhabditis elegans Hypothetical pr... 33 0.094
U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical pr... 28 3.5
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 28 4.7
L16560-2|AAA28000.1| 52|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ... 27 6.2
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 8.1
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 27 8.1
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 8.1
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 27 8.1
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.1
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.1
>U22832-2|AAA64509.2| 571|Caenorhabditis elegans Hypothetical
protein C09F5.1 protein.
Length = 571
Score = 33.5 bits (73), Expect = 0.094
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = +2
Query: 152 KNVSRQP--LHNIENMGKVVSTGPTKPNEPTKKGETKKSFLSNTGKAIQSTP--SRKVFT 319
++VSR+P LH N G+ + T P G T SFL+ +G + S P R T
Sbjct: 61 RDVSREPSFLHTSANYGQHIETSPPPVQRYNVSGATNSSFLNTSGDSRVSYPGADRSNDT 120
Query: 320 PRAVNVGSLIYTDEDGDKGCTFEEIEFTKP 409
N G I+ D G E + P
Sbjct: 121 TVINNYGYDIHEVRTDDGGARIIETHGSGP 150
>U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical
protein C03G6.10 protein.
Length = 370
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +2
Query: 53 DDIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSTGPTKPNE 232
+ + K ++ L + + F + D+ QAV ++ L+N N+G GPT N
Sbjct: 97 ETMTKNTIDALVYLEEKLEKFRLSADNPHWQAVSDLELY-LNNGSNLGLADKFGPTFENS 155
Query: 233 PTKKGETKKSFLSNTGKAIQST-----PSRKVFT 319
+ E K S L ++ KA+Q+ P++K++T
Sbjct: 156 VHESFEPKNS-LPSSLKAVQNNKLNHCPTKKIWT 188
>Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical
protein F40G12.10 protein.
Length = 438
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 LTRQAVKNVSRQPLHNIENMGKVVSTGPTK--PNEPTKKGETKKSFLSNTGKAIQSTPSR 307
++++ +SR+P + N K +TGPT P +P K +T +F+ T K +S +
Sbjct: 29 MSKERGSELSRRPQKSRSN-SKQKATGPTSALPTDPKSKIDT--TFMEITAKGFKSKKGK 85
Query: 308 KV 313
K+
Sbjct: 86 KL 87
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
C27F2.8 protein.
Length = 1715
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +2
Query: 143 QAVKNVSRQPLHNIENMGKVVSTGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSRKVFTP 322
Q K+V P+ K PT+P +P K E KK + Q TPS K TP
Sbjct: 1313 QRKKHVQVPPVTKTPVTPKTSIPPPTEPEKPIKPSEQKKPNAIPVERPKQPTPS-KARTP 1371
>L16560-2|AAA28000.1| 52|Caenorhabditis elegans Hypothetical
protein D2007.3 protein.
Length = 52
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 146 AVKNVSRQPLHNIENMGKVVSTGPTKPN 229
A+++++ P+HNI+ V ST T+P+
Sbjct: 6 ALEDITNCPIHNIDEDNNVFSTTTTRPS 33
>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
protein C48E7.6 protein.
Length = 1764
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 251 TKKSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIY---TDEDGDKGCTFEEIEFTKP-KHY 418
T KSF N +S+ SRK PR NV SL Y T + FE++ T+P HY
Sbjct: 1705 TMKSF--NKPPKPESSSSRKPPNPRRQNVSSLDYAGITSDTPPPMRLFEQVAQTQPTNHY 1762
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 179 NIENMGKVVSTGPTKPNEPTKKGETKKS 262
NIE +GK VS +KPN + ETK S
Sbjct: 2790 NIERIGKTVSVTLSKPNS-VETAETKSS 2816
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 179 NIENMGKVVSTGPTKPNEPTKKGETKKS 262
NIE +GK VS +KPN + ETK S
Sbjct: 2790 NIERIGKTVSVTLSKPNS-VETAETKSS 2816
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 179 NIENMGKVVSTGPTKPNEPTKKGETKKS 262
NIE +GK VS +KPN + ETK S
Sbjct: 604 NIERIGKTVSVTLSKPNS-VETAETKSS 630
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 149 VKNVSRQPLHNIENMGKVVSTGPTKP-NEPTKKGETKKSFLSNTGK 283
V+ VS +P H+ +MG +GP++P +EP+ + ++ S +++ K
Sbjct: 486 VEPVSVKPKHDPVSMGGRTVSGPSEPSSEPSSEPSSEPSLVASLVK 531
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 250 FPFFCWFIWFCGAC*DYFAHVFYIMQRLPGNIFHGLSSKVIS 125
F FFC+F+ F A YF + R F+ ++ K+ S
Sbjct: 91 FLFFCYFLHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWS 132
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 179 NIENMGKVVSTGPTKPNEPTKKGETKKS 262
NIE +GK VS +KPN + ETK S
Sbjct: 2790 NIERIGKTVSVTLSKPNS-VETAETKSS 2816
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 179 NIENMGKVVSTGPTKPNEPTKKGETKKS 262
NIE +GK VS +KPN + ETK S
Sbjct: 2790 NIERIGKTVSVTLSKPNS-VETAETKSS 2816
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,348,461
Number of Sequences: 27780
Number of extensions: 228351
Number of successful extensions: 710
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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