Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   6.8  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   9.0  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    25   9.0  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 219 WLGQLLCLRLRPYVSR 172
           WL +LLCL    YVSR
Sbjct: 475 WLNKLLCLDAASYVSR 490


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 159 LCFGIPMPLSKI-SFKVVL-------YYFNT*HACGELKASWQQGSSLNIYNFAFSSCRI 4
           LC+ +P PLS I S K ++       Y+    H   +L+ SW Q S  + +    S+ +I
Sbjct: 568 LCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKI 627


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 248 LHGQNKLDGGWPGFWLVSN 304
           L G   + G WPG W + N
Sbjct: 332 LGGSPYIPGFWPGIWTIGN 350


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 138 ALEYQNTTNDVTSRHKVEVSNITAVPTIKTESTDK 242
           ALE    T++V +R+K    ++ AV   KT+ ++K
Sbjct: 152 ALESAKKTDEVKARYKEISDSLVAVSAEKTQLSEK 186


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 131 VKYRLKLCCIISIHDMHVVNSRHHG 57
           ++ R ++   +S+HD+ V+NSR  G
Sbjct: 226 IQKRKEVVHTVSLHDIDVINSRTQG 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,366
Number of Sequences: 5004
Number of extensions: 31275
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)