Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1697 - 28795521-28797328,28797430-28797550                       29   3.0  
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    28   5.2  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   5.2  
06_03_1446 - 30220158-30220278,30220866-30222229                       27   9.1  
06_03_1434 - 30139990-30140110,30140698-30142061                       27   9.1  
06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624     27   9.1  

>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 41  SDEPCCHDALSSPHACH 91
           +D PCCHDA   P +CH
Sbjct: 351 ADHPCCHDARHGP-SCH 366


>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 132 LMALEYQNTTNDVTSRHKVEVSNITAVPTIKTESTDKDCFTAKISWMV 275
           L+  + + TT+D+ +RHK  V++ T   T+       D    K++ MV
Sbjct: 53  LVVGDQEQTTDDLLTRHKNVVADYTLSATVTVSLKQDDSTPQKVADMV 100


>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
            12568932-12569175,12569480-12569766,12570618-12571103,
            12571348-12571459,12571540-12571745,12573071-12573276,
            12573831-12574162,12574284-12574825,12574967-12576308,
            12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 195  SNITAVPTIKTESTDKDCFTAKISWMVAGLDSG 293
            S ++A+ +  ++   KD   A  SW+ AGL SG
Sbjct: 1630 SLVSAICSCASDKLKKDSTVASSSWIAAGLSSG 1662


>06_03_1446 - 30220158-30220278,30220866-30222229
          Length = 494

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 107 CIISIHDMHVV-NSRHHG 57
           C  ++HD HVV N+ HHG
Sbjct: 366 CTANLHDFHVVDNTAHHG 383


>06_03_1434 - 30139990-30140110,30140698-30142061
          Length = 494

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 107 CIISIHDMHVV-NSRHHG 57
           C  ++HD HVV N+ HHG
Sbjct: 366 CTANLHDFHVVDNTAHHG 383


>06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624
          Length = 443

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 107 CIISIHDMHVV-NSRHHG 57
           C  ++HD HVV N+ HHG
Sbjct: 367 CTANLHDFHVVDNTAHHG 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,850
Number of Sequences: 37544
Number of extensions: 193236
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)