Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324F01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   0.82 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.4  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +3

Query: 153 NTTNDVTSRHKVEVSNITAVPTIKTESTDKDCFTAKISWMVAGLDSGLFQINISAH 320
           N TN++T    V   NI      K+E+  K C    IS    G  S  FQ   S H
Sbjct: 181 NKTNEITEHRTVLAVNIE-----KSENETKTCKKYAISSNSLGSRSRSFQRTSSCH 231


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 473 ASYMIVVVVLDCLNKSLSDCDS 408
           AS   +  + DCL   L+ C+S
Sbjct: 163 ASKCALTTLTDCLRSELAQCES 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,573
Number of Sequences: 438
Number of extensions: 2168
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)