Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324E11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 135 3e-33
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 49 4e-07
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 38 0.001
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 29 0.42
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.3
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 1.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 3.0
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 5.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 5.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 6.8
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 6.8
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 6.8
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 25 9.0
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 9.0
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 135 bits (327), Expect = 3e-33
Identities = 63/151 (41%), Positives = 103/151 (68%), Gaps = 6/151 (3%)
Frame = +3
Query: 84 STLRERQLNALKQMLNLNQPLTK------NIANEPTWKILIYDRVGQDIISPLVSVKDLR 245
S+LRE Q+ +L+++LNLNQ + + + +N P WK+LI+D+ G + IS ++ + DLR
Sbjct: 10 SSLREAQIQSLEKLLNLNQDVNELESSPQHASNFPIWKVLIFDKAGSETISSVLRISDLR 69
Query: 246 ELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHK 425
+ GVT+H+ + S R I +VPA+YF P+ EN++ I +DL G+Y+ ++ F S I+R
Sbjct: 70 KHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRAL 129
Query: 426 LEDLAASAIQSNSAVNIHKVFDQYLNFICLE 518
LE A A ++N++ IH+V+DQYLN++ LE
Sbjct: 130 LEQFAELASKTNTSHMIHQVYDQYLNYVVLE 160
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 49.2 bits (112), Expect = 4e-07
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Frame = +3
Query: 123 MLNLNQPLTKNIANEPT-WKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIP 299
+++ +Q K I E + KIL+ + I+S ++ +L E + L + L + R+ +
Sbjct: 3 LVSASQSYFKRIFQEVSDLKILLLEEDTTKIVSSCITQSNLLEQQIYLTVLLGNKREKLR 62
Query: 300 EVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIH 479
+ V F P+ L +C++L + Y +YHL F + I + LE LA S + +I
Sbjct: 63 HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESD-DFEAVKSIQ 121
Query: 480 KVFDQYL 500
+ F YL
Sbjct: 122 EFFLDYL 128
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 37.9 bits (84), Expect = 0.001
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 174 WKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRI 353
WK+LI D DII+ +++ L E + L + R A+Y ++ +D I
Sbjct: 24 WKVLIVDTKTADIINHFITIHSLLEEKIAAVEILENPRTPNSSFEALYILHSEEKLVDCI 83
Query: 354 CQDLD-NGIYDQYHLNFISPITRHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLE 518
+D + + Y H+ F+ + + L S I S I V YL+F LE
Sbjct: 84 LKDEEYDKRYPGIHIVFLDMVKEPLINKLRTSRIAS----KIRTVQVAYLDFTSLE 135
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 168 PTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLD 347
P + Y +G+ + S + + LR LG T+H L ++ +Y C S E L
Sbjct: 160 PLSSVHAYVEIGEGMFSMEIVTEQLRLLGATVHASLQMTEENPVSHAVLYDC--SQETLK 217
Query: 348 RI 353
+I
Sbjct: 218 KI 219
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 312 VYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITR 419
+ C+PS+ +D I + G+YD + F + R
Sbjct: 1334 ILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIR 1369
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 262 FIYNYIQIEIRYQKYLLFISVLLLMKIWIAF 354
F Y+Q+++R QKY+ F LL+ + +
Sbjct: 22 FRKTYLQLQVRRQKYMAFYVSLLVWNFYFGY 52
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 3.0
Identities = 23/94 (24%), Positives = 40/94 (42%)
Frame = +3
Query: 105 LNALKQMLNLNQPLTKNIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSD 284
+NAL + ++N T+N+ + D V QD ++ + +L +T
Sbjct: 1019 VNALSKKDDINVQKTENVDESVGLNAMFMDNVNQDSLNSVDQSSGKDKLLLT-------- 1070
Query: 285 RDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQ 386
S P P +F ++E L +D D I+DQ
Sbjct: 1071 -SSTPNKPTTFFMPANEEILGSPAKDYD--IHDQ 1101
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 386 LIIDPIIEILANAIQIFIRRRTEINSRYFW 297
+ +DP+ ++ + +Q F + R N RY W
Sbjct: 279 IYLDPVTQLPISNVQAFQQVREVYNQRYSW 308
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 378 YDQYHLNFISPI-TRHKLEDLAASAIQSNSAVNIHKVFDQYLNFI 509
Y++ LN I + T K+E++ V++ +F +LNFI
Sbjct: 24 YERKRLNEIGDLLTPQKIEEVLNCKDTKQRNVSLEDIFQDFLNFI 68
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +3
Query: 243 RELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRH 422
R+ G T+ + D ++ A YF S +LD D++ + L SP+ +
Sbjct: 26 RKTGFTVPRDVKKGDDGFEDMDA-YFLSDGSIHLDEDNGDIEQDMPPVTRLQPTSPMAVN 84
Query: 423 KLEDLAASAIQSNSA 467
D A+ A S+S+
Sbjct: 85 AASDEASHASSSDSS 99
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 288 DSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDL 437
DS F +NLD LD I + H+N SP T H E L
Sbjct: 68 DSSDSCATFEFADFFKDNLDDFA--LDGPIININHVNQTSPYTHHNAEPL 115
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 318 FCSPSDENLDRICQDLDNGIYDQY 389
F SPS+EN+ +D+ N I QY
Sbjct: 429 FISPSEENIVDSSEDIINQIASQY 452
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 234 KDLRELGVTLHLQLHSDRD--SIPEVPAVYFCSP---SDENLDRICQDLDNGIYDQYHLN 398
+D+ LG+ L+ ++ + +I E+ P S +N+D IC+ LD ++D+ +
Sbjct: 691 QDIWALGILLYTIVYRENPYYNIEEILDAKLRIPFELSKDNVDLICRMLDRNVHDR--IT 748
Query: 399 FISPITRHKLEDL 437
+ H +D+
Sbjct: 749 IEETLQHHWFDDI 761
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +3
Query: 201 GQDIISPLVSVKDLRELGVTLH------LQLHSDRDSIPEVPAVYFCSPSDENLD 347
G S L V D EL + + L L S R+S PE+ + S EN+D
Sbjct: 330 GSSYASTLRKVYDFSELSLPTNGKDYDELYLQSSRNSEPEISTIINDSLQQENMD 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,657
Number of Sequences: 5004
Number of extensions: 35820
Number of successful extensions: 80
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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