Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324E11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0348 - 23346182-23348022,23348118-23348148 116 2e-26
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 40 0.001
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838... 40 0.001
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 33 0.14
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929... 27 6.9
09_01_0149 + 2240183-2241133 27 9.1
04_01_0206 + 2507827-2508705,2508844-2509902 27 9.1
>03_05_0348 - 23346182-23348022,23348118-23348148
Length = 623
Score = 116 bits (278), Expect = 2e-26
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 10/155 (6%)
Frame = +3
Query: 87 TLRERQLNALKQMLNLNQPL----------TKNIANEPTWKILIYDRVGQDIISPLVSVK 236
TLR++QL+++ +ML+LNQ L + E +KIL+ D +++P++ V
Sbjct: 4 TLRKKQLDSIVRMLHLNQQLQGSPDGVGGGVGSAEEEEAYKILVMDSPCVALLAPVLRVG 63
Query: 237 DLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPIT 416
+LR GVTLHL + R +P+ PAVY P+ N+DR+ D G+Y +HLNF + +
Sbjct: 64 ELRRHGVTLHLNIDKARQQVPDAPAVYLLRPTAANVDRVAADAAAGLYASFHLNFSTCVP 123
Query: 417 RHKLEDLAASAIQSNSAVNIHKVFDQYLNFICLED 521
R LE LA++ S SA + +V DQYL+F+CLE+
Sbjct: 124 RALLERLASATAASRSAHRVARVADQYLDFVCLEE 158
>02_03_0084 -
15041261-15041437,15041625-15041765,15042857-15042946,
15043111-15043201,15043953-15044155,15045361-15045438,
15045535-15045651,15046111-15046161,15046405-15046500,
15046726-15046742,15046938-15047064,15050585-15050681,
15051565-15051638,15051910-15051993,15052099-15052290,
15054191-15054319,15055607-15055639,15055747-15055843,
15055940-15055990,15057494-15057564,15058305-15058455,
15058625-15058703,15059265-15059346,15060335-15060335,
15060565-15060620,15060969-15061018,15061511-15061580
Length = 834
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 153 NIANEPTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPS 332
NI N+ ++LI D++ IIS + D+ E GV+L L+ R +P + A+YF P+
Sbjct: 52 NIQNQHG-RVLIMDKLTVKIISCSCKMADITEEGVSLVEDLYKRRQPLPSLDAIYFIQPT 110
Query: 333 DE 338
E
Sbjct: 111 KE 112
>02_03_0030 -
14083117-14083166,14083620-14083689,14083777-14083857,
14083940-14084065,14084916-14085143,14085246-14085325,
14086567-14086768,14086857-14086946
Length = 308
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +3
Query: 168 PTWKILIYDRVGQDIISPLVSVKDLRELGVTLHLQLH---SDRDSIPEVPAVYFCSPSDE 338
P K+L+ D ++S + S DL V L + S R+S+ + AVYF PS +
Sbjct: 19 PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASSSRESMAHLKAVYFLRPSSD 78
Query: 339 NLDRICQDLDNGIYDQYHLNFISPITRHKLEDLAAS 446
N+ ++ + L + +YHL F + + +++ LA S
Sbjct: 79 NVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADS 114
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 273 LHSDRDSIPEVPAVYFCSPSDENLDRICQDLDNGI--YDQYHLNFISPITRHKLEDLAAS 446
L+ R +P + A+YF P+ EN+ D+ I Y + ++ F SP+ R E +A
Sbjct: 462 LYMRRQPLPLMDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQR---ELVAQI 518
Query: 447 AIQSNSAVNIHKVFDQYLNFICLE 518
SN I + + L + ++
Sbjct: 519 KKDSNVRARIGALSEMNLEYFAID 542
>02_03_0226 -
16591383-16592030,16592132-16592211,16592246-16592971,
16593060-16593192,16596839-16597518,16597604-16597666,
16597740-16597916,16598414-16598542,16598638-16598796,
16599057-16599224,16599418-16599519,16599812-16599857
Length = 1036
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 306 PAVYFCSPSDENLDRICQDLDNGIYDQYHLNFISPITRHKLEDL 437
P V+ S+ D I ++LD G Q + + + R KLEDL
Sbjct: 669 PNVFLTMTSNPKWDEITRELDPGQTPQDRPDLVVRVFRAKLEDL 712
>09_01_0149 + 2240183-2241133
Length = 316
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 259 LFIYNYIQIEIRYQKYLLFISVLLLMKIWIAFAKISIMG 375
+ IY+ +Q++ Y +L + VLL + ++AF +++G
Sbjct: 162 VLIYSVMQVQRHYLIKVLSVQVLLFVLCFLAFLYFNVVG 200
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 231 VKDLRELGVTLHLQLHSDRDSIPEVPAVYFCSPSDENLDRICQD 362
V+ +R L L + + D +P +P + + NLD IC+D
Sbjct: 496 VRSIRALSNYLMFLVVTRPDMVPGLPQNWLYQQTCNNLDEICED 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,961,569
Number of Sequences: 37544
Number of extensions: 193460
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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