Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.20 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 301 KYLLFISVLLLMKIWIAFAKISI 369
           KYLLF  +L+ + IWI    +++
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNV 336


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 192 DRVGQDIISPLVSVKDLRELGVTLHLQL 275
           DRV    +  + ++ DL++    LHLQ+
Sbjct: 490 DRVCDMALDMVEAITDLKDRSTGLHLQI 517


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 129 NLNQPLTKNIANEPTW 176
           N  Q L   IAN PTW
Sbjct: 36  NRTQALESIIANIPTW 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,340
Number of Sequences: 438
Number of extensions: 2259
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)