Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    50   2e-07
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    30   0.18 
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    30   0.24 
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   5.2  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.8  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   9.0  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 30/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
 Frame = +3

Query: 138 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHT---D 308
           M+ ++ ++ L+   ++G   VIL+CAL  +K W+P       ++ P+P ++ ++++   D
Sbjct: 1   MSDLRKIIGLSSVLAVGFMLVILSCAL--FKNWYPL------LIAPLPNLLTKKYSTSHD 52

Query: 309 GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFF 488
                +   ++   F     + + FALPIV    G+I   A  ++  G  I++L I  + 
Sbjct: 53  FLQEEDRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYS 112

Query: 489 TIFDMDDSDY 518
             F   + ++
Sbjct: 113 QAFVQHEEEF 122


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 354 ITMGFLVSSFALPIVLARAGVIFWGAC 434
           I +  L+S+FAL I   ++G  FWGAC
Sbjct: 177 IAITLLMSTFALWIKAVKSGSSFWGAC 203


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +3

Query: 252 VLFYILCPIPTMIARRHTDGAGGSNSACM--ETAVFITMGFLVSSFALPIVLARAGVIFW 425
           +L YI+CP+ T+++  +        S  +  +  V + + F +S   +P V      +F+
Sbjct: 21  ILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYLFF 80

Query: 426 GACY-LTLAGNVIVYLTI 476
              + L++  +++VYL+I
Sbjct: 81  SPPFSLSIGPSLLVYLSI 98


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
 Frame = +2

Query: 149 KRFGVVGIRGFNWNDI---CHTSLCLTTIQTMVAILRCAILHSVP--NTYDDR*EAY*WC 313
           KR    G RGF   ++   C        + ++  IL C + H  P     DD        
Sbjct: 257 KRADRAGTRGFRAPEVLFRCQNQTSSIDVWSVGVILLCFLTHRYPFFRCEDDIDAIVELA 316

Query: 314 WRFKFRLYGNCSIYHNGIFSQLFCATDSSRQGWCDFL 424
             F      NC++ H  I+S         +  W D +
Sbjct: 317 HIFGRNGMSNCALLHGQIWSDNIPTLLDQKHNWLDLI 353


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 WPFFVVLFYILC-PIPTMIARRHTDGAGGSNSACMETAVFI 356
           +PF+ VLFY  C P+    A  H       +S+CM+   ++
Sbjct: 523 YPFYEVLFYDYCRPLNQAFASGHQRSV--IHSSCMDPEYYV 561


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 521 RIIGVVHVKDGEETQDGQIYDHVTGQCKVTCTP 423
           R++ +++ +DG E+    +Y H+    KV+ TP
Sbjct: 680 RVMDILY-RDGPESFSKLLYSHIEPMLKVSITP 711


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 335 YGNCSIYHNGIFSQLFCATDSSRQG 409
           YG  ++Y  GI  Q  C  D  R+G
Sbjct: 245 YGETNLYLLGITGQFDCRVDLDREG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,794
Number of Sequences: 5004
Number of extensions: 41733
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)