Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po...    26   3.0  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       26   3.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.8  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   6.8  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.0  

>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 472 IMGKVDGKRRAGRRKKSWLRNIREWTGIASVEQL 371
           + GKV G    G+RK S LR  RE  G+  +E +
Sbjct: 203 LTGKVQGAIVDGQRKASILREKREELGLNKLETM 236


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 501 RSIHAAAADKLWAKWTERDVLGEEKSH 421
           + IH AA D     WT  +V G+  SH
Sbjct: 96  KHIHGAALDITITPWTRMEVQGKPHSH 122


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 446 TCWAKKKVMAPEYPGVDRYCL 384
           T W        EYP VD YCL
Sbjct: 266 TVWPPGSFALGEYPHVDTYCL 286


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 AMTFFFAQHVSFRPLCP*FISCSSMYRSF 504
           A TFFF + + F P+C   +SC+    SF
Sbjct: 280 AKTFFF-KDIMFEPVCEIALSCNYDQTSF 307


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 412 SGAMTFFFAQHVSFRPLCP*FISCSSMYRSF 504
           S A ++FF   +++ P C  F  C+S   +F
Sbjct: 273 SHATSYFFTDDIAWDPQCEYFDDCNSDQTAF 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,793
Number of Sequences: 5004
Number of extensions: 30998
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)