Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0417 - 17970032-17970132,17970290-17970635                       31   0.56 
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    29   3.0  
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323...    28   4.0  
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912           28   5.2  
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516...    27   6.9  
11_06_0179 + 20952070-20955228                                         27   9.1  
04_04_0589 + 26449184-26450500,26452220-26452310,26452428-264525...    27   9.1  

>07_03_0417 - 17970032-17970132,17970290-17970635
          Length = 148

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 472 IMGKVDGKRRAGRRKKSWLR 413
           + G  DG RRAG+R+ SWLR
Sbjct: 54  VAGSGDGHRRAGQRQSSWLR 73


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 516 PCAQERSIHAAAADKLWAKWTERDVLGEEKSHGSGISGSGPVLPPSNSCSGW 361
           P A  R+  AAA D+L A W +R   GE  + G G  G G   P  +S   W
Sbjct: 140 PTAAPRA--AAAQDELGALWHDRS--GEATAVGGGGGGGGYSYPQPSSPFKW 187


>11_01_0421 +
           3236798-3237144,3237356-3237441,3237741-3237895,
           3237971-3238035,3238180-3238363,3238785-3239048,
           3239141-3239224,3239727-3239984,3240214-3240472,
           3240550-3240755,3240896-3240946,3241041-3241337
          Length = 751

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 453 PSTLPIIYQLQQHVSIVPEH 512
           PS +P+++ ++QHV +VP+H
Sbjct: 457 PSEIPVVH-IEQHVMVVPQH 475


>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
          Length = 487

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 465 AKWTERDVLGEEKSHGSGISGSGPVLPPSNSCSGWL 358
           AKW    V     S     S SG  LPP +  + WL
Sbjct: 88  AKWLPDVVAASSSSSSPATSASGRFLPPESPTATWL 123


>06_03_0477 -
           21250811-21250981,21251261-21251374,21251447-21251613,
           21252051-21252153,21252315-21252367,21252438-21252570,
           21252835-21253183,21253685-21254003,21254519-21254717
          Length = 535

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 476 INYGQSGRKETCWAKKKVMAPEYPGVDRYCLRRTA 372
           I YG    + +C    +  A  YPGV++Y +R  A
Sbjct: 414 IVYGGGSAEISCSVAVEAAADRYPGVEQYAIRSFA 448


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 403 EWTGIASVEQLFRLAADRKEYRKLTANL 320
           +W GI  VE     A  RK+YRKL  +L
Sbjct: 66  DWYGILQVEATADEATIRKQYRKLAFSL 93


>04_04_0589 +
           26449184-26450500,26452220-26452310,26452428-26452585,
           26452670-26452768,26453296-26453345,26453654-26453705,
           26453773-26454058,26454286-26454400,26454938-26455020,
           26455381-26455466
          Length = 778

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 436 RRKKSWLRNIREWTGIASVEQLFRLAADRKE 344
           RR+ SWLR+IR   G   V    R ++D K+
Sbjct: 232 RRRGSWLRSIRNVAGSMVVGSRDRRSSDEKD 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,239
Number of Sequences: 37544
Number of extensions: 244819
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)