Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80955-8|AAN65295.1|  881|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    27   8.1  

>U80955-8|AAN65295.1|  881|Caenorhabditis elegans Hypothetical
           protein T04C9.1a protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 419 APEYPGVDRYCLRRTAVPAGC*QKGIQKANGQ-PSGLKRH 303
           +P+ PGV    +R T V +    +G+QK +   PS + RH
Sbjct: 637 SPKTPGVGSKIVRSTQVVSSSYSRGMQKRDAMYPSEIARH 676


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 316 PEGWPLAFCIPFCQQPAGTAVRRRQYRSTPGYSGA 420
           P   P+    P C QP   A     Y+ TPGY+ A
Sbjct: 205 PRPMPVYAPAPACAQPPCPAYNPYGYQGTPGYAPA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,557,156
Number of Sequences: 27780
Number of extensions: 185203
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)