Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   5.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   5.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 447 DVLGEEKSHGSGISGSGPVLPPSNS 373
           +V+G   SHG+ I  +   +P SNS
Sbjct: 537 NVVGSGLSHGNWIYPASMTIPGSNS 561


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 334 AFCIPFC 354
           AFC+PFC
Sbjct: 43  AFCLPFC 49


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 334 AFCIPFC 354
           AFC+PFC
Sbjct: 42  AFCLPFC 48


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 341 VFLSVSSQPEQLFDGGNTGPLPD 409
           V++ +  QPE+ ++   T P PD
Sbjct: 235 VYIPLYQQPERHYERRATPPQPD 257


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 333  SFLYSFLSAASRNSCSTEAIP 395
            SF  SFL  +S +SC+ +  P
Sbjct: 957  SFYSSFLYKSSESSCNPDQKP 977


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,945
Number of Sequences: 438
Number of extensions: 2265
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)