Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324E03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 35 0.006
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 30 0.24
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 0.73
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.2
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 3.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 3.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 3.9
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 26 3.9
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 25 6.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 6.8
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 9.0
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 9.0
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 9.0
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 9.0
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 35.1 bits (77), Expect = 0.006
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = +3
Query: 45 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 224
+PT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 225 STPTSS 242
STP +S
Sbjct: 470 STPLTS 475
Score = 27.9 bits (59), Expect = 0.97
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 45 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 224
+PT S TP S TTA+S T PL N +T T + + + T + + T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTATSASSTPFGNSTITSSASGSTGE 586
Query: 225 STPTSSG 245
T T+SG
Sbjct: 587 FTNTNSG 593
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 78 SKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSS 242
+ T T+ASS P+T++ A ++ T + S T++ T +A ST ++S
Sbjct: 347 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 401
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 78 SKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSS 242
+ T T+ASS P+T++ A ++ T + S T++ T +A ST ++S
Sbjct: 461 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 515
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 131 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWMQGSKD 262
+K I + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 0.73
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 65 SDSKLEDDLYNSILVADYDNAVEKSKQIYED--KKSEVITNVVNKLIRNNKMNCMEYAYQ 238
++ KL L N+I++ SK++ E KKS+ + N VNK ++ N N Q
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNK-VKQNMRNGASARDQ 197
Query: 239 LWMQGSK 259
QGSK
Sbjct: 198 AREQGSK 204
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 45 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 224
+PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1147 LPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTAT 1204
Query: 225 STPTSSG 245
T++G
Sbjct: 1205 EVQTTTG 1211
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 48 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 227
PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1230 PTTGATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTATE 1287
Query: 228 TPTSSG 245
T++G
Sbjct: 1288 VQTTTG 1293
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 48 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 227
PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1312 PTTGATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTATE 1369
Query: 228 TPTSSG 245
T++G
Sbjct: 1370 VQTTTG 1375
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 42 YMPTEPQSPTPNSKTIFTTASSLPITTMP 128
YMP P +P PN+ IF + P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 463 LVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGENKCEL 287
L +LP +++PAD ++ + G +VVA S T VH ++ V C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLT---VHGISYVVDTGYCKL 788
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 77 LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 208
LE+D + ++ + A+ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 158 KKSEVITNVVNKLIRNNKMNCMEYAYQLWMQ 250
K+ +T+ NKL+ ++ + +YAY L +Q
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 14 VILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDN 124
V+L LFV L+ + ++ S L+DD + S + Y N
Sbjct: 13 VVLLLFVVFLWLISSFLTSSLLDDDNFFSPFLITYIN 49
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 50 NGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 223
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ +
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESL 699
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 6.8
Identities = 28/123 (22%), Positives = 56/123 (45%)
Frame = +3
Query: 45 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 224
+ T S P+S T+ +++SSL +++ P+ A+ S+ + SS +S T S + T
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSSLIVSSSPV--ASSSSSPIPSSSSLVS-TYSASLSNITHS 719
Query: 225 STPTSSGCKAPRIXXXXXXXXXXXXXXPKTTLS*CTSATVLL*RCAMTATTMADLPTAMA 404
S ++ + I T LS TS++ ++ + ++LP+A A
Sbjct: 720 SLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIV-SSTTVSNISSNLPSATA 778
Query: 405 RTR 413
++
Sbjct: 779 SSQ 781
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 145 DLR-GQEERSHHKCRKQTHTKQQDEL 219
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 391 LRRWQGQDESKSQLEVRSSV 450
L + QGQDE+KS E SSV
Sbjct: 754 LEQEQGQDEAKSPAEQSSSV 773
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 101 ILVADYDNAVEKSKQIYEDKKSEVITNVVN-KLIRNNKMNCMEYAYQLWMQGSKDIVREC 277
+LV + E+S + + + N+ KL NN +E Q ++QG K+ +++C
Sbjct: 152 VLVIELLETQERSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKC 211
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 466 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTV 338
+LV+LP + LP++ +R+ G +V+A S T+
Sbjct: 752 ELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTI 794
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 395 GDGKDKTSPKVSWKFVPLWENNKVYFKIV 481
G G D K SW+ PLW K+Y K++
Sbjct: 300 GYGFDARKRK-SWETYPLWVQVKLYEKVL 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,510
Number of Sequences: 5004
Number of extensions: 31199
Number of successful extensions: 122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -