Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0232 + 21559467-21559532,21559586-21560200                       29   3.0  
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164...    28   4.0  
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    28   5.2  
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    27   6.9  
05_06_0110 + 25632514-25632834,25633200-25634039                       27   9.1  

>11_06_0232 + 21559467-21559532,21559586-21560200
          Length = 226

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 63  SPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 206
           +P P ++T    ASS P  T P +  +R  R RRA+++Q    +S  T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186


>12_01_0217 +
           1647319-1648327,1648462-1648577,1648650-1648817,
           1648911-1649038,1649121-1649220,1649329-1649433
          Length = 541

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
 Frame = +2

Query: 119 DNAVEKSKQIYEDKKSEVIT--NVVNKLIRNNKMNCMEYAYQLWMQGSKDIVRECFPVEF 292
           DN +E+  +  +   + +I     V   +  NKM+  E+ Y  +    KD        E 
Sbjct: 422 DNEIEQLMEAADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEEL 481

Query: 293 TLIFAENNIKLMYKRDGLALTLRD-DSNNDGRLAYGD 400
                E  +   Y  + +   + D DSNNDGR+ Y +
Sbjct: 482 EQALKEQGL---YDANEIKDVITDADSNNDGRIDYSE 515


>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 119 DNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLW--MQGSKDIVREC 277
           D  +++ K+ Y +   + + N + ++   N +     AY+LW    G K  +REC
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355


>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 367 QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 489
           +Q + Q  L   +GQ+E+ + L++ S +  + G + DC +S
Sbjct: 99  RQNKLQEALDLLKGQEETSAILQLESQIYYRLGRMNDCMNS 139


>05_06_0110 + 25632514-25632834,25633200-25634039
          Length = 386

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 21  CVFSWRLY-MPTEPQSP-TPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKS 173
           C +S RL  +P  P SP +P S  I  + S       P KKA +S + +   S
Sbjct: 185 CSWSSRLMVLPPPPASPPSPASAVISPSESGTAAPAFPAKKAAKSAKKKDGPS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,920
Number of Sequences: 37544
Number of extensions: 193904
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)