Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E03f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590551-1|CAH71650.1|  600|Homo sapiens fibronectin type III do...    30   4.3  
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              30   4.3  
M57417-1|AAA63229.2|  294|Homo sapiens mucin protein.                  29   9.9  

>AL590551-1|CAH71650.1|  600|Homo sapiens fibronectin type III
           domain containing 1 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 24/78 (30%), Positives = 33/78 (42%)
 Frame = +3

Query: 3   KPFKLFCVFSWRLYMPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQM 182
           KP     V     + PT    PT  +  + TT +  P T        R+T TRR  + + 
Sbjct: 138 KPLVGLEVIKKTTHPPTTTMQPTTTTTPLPTTTTPRPTTAT----TRRTTTTRRTTTRRP 193

Query: 183 S*TNSYETTR*TAWSTPT 236
           + T    TTR T  +TPT
Sbjct: 194 T-TTVRTTTRTTTTTTPT 210


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 48  PTEPQS-PTPNSKTIFTTAS-SLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TA 221
           PT   S PT N+ +  TT++ S PIT+        +T T +  +     T++  T + + 
Sbjct: 740 PTSTSSAPTTNTTSAPTTSTTSAPITSTISAPTTSTTSTPQTSTISSPTTSTTPTPQTST 799

Query: 222 WSTPTSSGCKAP 257
            S+PT+S   AP
Sbjct: 800 TSSPTTSTTSAP 811


>M57417-1|AAA63229.2|  294|Homo sapiens mucin protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 22/66 (33%), Positives = 26/66 (39%)
 Frame = +3

Query: 48  PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 227
           PT  Q  TP S T  TT +  P    P+      T T     +Q   T    TT  T   
Sbjct: 52  PTSTQRTTPTSITTTTTVTPTP---TPITTTTTVTPTPTPTGTQTPTTTPISTTT-TVTP 107

Query: 228 TPTSSG 245
           TPT +G
Sbjct: 108 TPTPTG 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,815,129
Number of Sequences: 237096
Number of extensions: 1034687
Number of successful extensions: 3717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3713
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)