Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324E03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 69  TPNSKTIFTTASSLPITTMPLKKANRSTRT 158
           TP +  I  + +++PIT++P    + ++ T
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 3    KPFKLFCVFSWRLYMPTEPQSP 68
            +P  +F   +   YMP+EP++P
Sbjct: 946  EPLYVFVRSAPNFYMPSEPKAP 967


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 473 KIVNTQRNQYL 505
           ++ NTQRN+YL
Sbjct: 366 RVNNTQRNEYL 376


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 275 TPGRYPWSLASRAGRRTP 222
           TPG + +S+A+ A   TP
Sbjct: 304 TPGSFNFSMAALATEHTP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,536
Number of Sequences: 438
Number of extensions: 2277
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)