Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324D12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 58 8e-10
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 54 1e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 46 3e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 38 0.001
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 1.7
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 3.9
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 5.2
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 5.2
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 6.8
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 6.8
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.0
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 9.0
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 58.0 bits (134), Expect = 8e-10
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Frame = +2
Query: 188 SEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMA 367
+ +L E+ EWI N D+ + L+ G +LC++ I+ S+M
Sbjct: 2 TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57
Query: 368 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 517
F MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S R A
Sbjct: 58 FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYA 108
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.0 bits (124), Expect = 1e-08
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +2
Query: 206 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 382
E+ +WI G G F + L++G +L L P+ +IK ++ + F+ +
Sbjct: 46 EAKKWIEECLG---TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 383 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 505
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 46.4 bits (105), Expect = 3e-06
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 203 HESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 379
HE+ +W+ E N ++D+F + L +G +LC+LA +P + ++ +
Sbjct: 68 HEAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124
Query: 380 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 505
+NAF +G+ F+T DL R N+ V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 37.9 bits (84), Expect = 0.001
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Frame = +2
Query: 116 EMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIR-MITGEPENTSGDMDN-----FY 277
E+ R T G ++ IN EE E ++ I ++ G+P+ S N F+
Sbjct: 91 EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146
Query: 278 EVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 421
+ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +2
Query: 269 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 421
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 341 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 463
++ +S A E + AF+E A+Q G+P E W+
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWD 158
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 397 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKG 516
P+ + V CTG G+ V +S D L +TG+ G
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSG 155
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 16 PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 192
P PP L S H +FT F+ L R+ + S RI +P D QI
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225
Query: 193 GAG 201
G
Sbjct: 226 RTG 228
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = -2
Query: 451 DSLKSFLCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDVVG*LAQKSAVFKHFVE 272
D L+ FLC+ SC F + H + +D + V G Q S + H+
Sbjct: 118 DELRYFLCKKESDSCYFGNASSSFHFVTSPSTFFIRYDD-NITVAGINVQDSLSYSHYQA 176
Query: 271 VVHIP*GVLW--FAGDHPNPFQGLVG 200
+ G+ + P++G++G
Sbjct: 177 LPDFQFGITLKEYVPSSMLPYKGVLG 202
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 433 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 320
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 146 LIWSLGCLPFRTNNNLINYLNK 81
LIW+ CL T+ +LI YL++
Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 237 PVIIRIHSKDSWASSSLYLL 178
P IIR H +D W S + LL
Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 298 SSVQASQQHPPEH--DQ-KDQHIVDGLQVHGEYQRFPRSRKTVG 420
+S++ S HP + DQ D+ VDGL + Y PR+R G
Sbjct: 275 ASLEDSLSHPTKSILDQLADKMEVDGLNNNSNYSATPRTRVVNG 318
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 396 KALIFSMHLKAIDDVLIFLIMFGWMLLA 313
K LIF+ + DD+ FL GW LA
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALA 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,199
Number of Sequences: 5004
Number of extensions: 50180
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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