Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   3.9  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   6.8  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   9.0  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   9.0  

>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 436 FQLLCNKSMVLRLMLLNFFYYGV 504
           F+LLC + +++ L L N F YG+
Sbjct: 306 FKLLCTEPIIMALGLYNGFAYGL 328


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224 PVNTVMQLPY-LANCTCIIKLYTNLPI*CQNT 316
           PV    ++ Y L+NC C+   Y  +P  CQ +
Sbjct: 453 PVTIEQRIQYVLSNCHCLSAFYLCMPSLCQKS 484


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 403 YEVTSLSSLKNFQLLCNKSMVLRLMLLNFFYYGVYTQII 519
           +EV ++ SL  F ++    M +   +  F  + +YT+I+
Sbjct: 476 FEVNNMYSLTLFDIIFKSGMKIAPFISMFITFAIYTKIM 514


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 411 NIFKFSEELPIIVQQKYGIKVDASKFFLL 497
           +IF+F++E  + V  +YG+ +  S  F L
Sbjct: 5   SIFRFADEKGLKVAARYGVLMSTSFIFAL 33


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 490 KNLEASTLIPYFCCTIIGSSSEN 422
           + LEAS    + CC +IG + +N
Sbjct: 323 QRLEASRKYIFGCCVVIGENGDN 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,342
Number of Sequences: 5004
Number of extensions: 35376
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)