Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1337 + 29434240-29434449,29434504-29434675,29435067-294351...    27   9.1  

>06_03_1337 +
           29434240-29434449,29434504-29434675,29435067-29435152,
           29435351-29435759,29435893-29436020,29436094-29436153,
           29436501-29436650,29436771-29436926,29437045-29437182,
           29437270-29437343,29437752-29437853,29437951-29438191,
           29438651-29438668
          Length = 647

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 139 LDCIFIKP*LLCYCILRLFV 80
           LD IF+ P LL YC + LF+
Sbjct: 94  LDQIFVAPELLAYCTISLFL 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,565
Number of Sequences: 37544
Number of extensions: 168808
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)