Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D07f
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.5  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   4.5  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   6.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   6.0  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 445  FAYNVLKTKTYKQFARLQLISQTLFSRVYFD--NKLEAGSSIALQFDVDEVKAQSSSGD 275
            F +N      YK   R+      + + + FD  N+L++G+  A+ +D+  +++  S  D
Sbjct: 1912 FVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSD 1970



 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 125  VRKVHEQSVEANAIPLFKRVQEVFFEFP 208
            +R+V   S+    IPLF + +E +F FP
Sbjct: 2094 IREVLYPSLIYQDIPLFFKAEESYFNFP 2121


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 400 RLQLISQTLFSRVYFDNKLEAGSSIALQFDVDEVKAQSS 284
           R QLI QT+ S +    +     +IA QFD+ +V A ++
Sbjct: 795 REQLIEQTVISLISIAKQPVEQKNIAGQFDLPQVHAMNT 833


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 70 TNVSTYQTDKQVFRHFSFC 14
          TN+S   T+KQ+   FSFC
Sbjct: 8  TNISPEVTEKQISDFFSFC 26


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 133 FPHNVI---IIVGLSDNNSFPVSRTNVSTYQTDKQVFRHFS 20
           +PH +I    ++  +D+N+  V + ++   Q D+   +HF+
Sbjct: 125 YPHELIDLAFLISDTDDNTLEVLKQHLDAIQNDEDESKHFN 165


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 15  QKEKCRNTCLSV*YVLTLVRDTGKLLLSDKPTII 116
           QKEK ++  L V YV+  V+D G  L+SD  T I
Sbjct: 681 QKEKMKHDDL-VQYVINNVKDRGIPLVSDVKTAI 713


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 29  SKYLFICLICAYISTGHGKTVIVGQTYDYNNVVR 130
           S   F+C +C Y+S     T+     Y  +++V+
Sbjct: 124 SSRAFLCWVCGYVSVLGYATIYASTVYSASSMVQ 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,321
Number of Sequences: 5004
Number of extensions: 37112
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)