Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D07f
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    30   1.0  
Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z68315-1|CAA92669.1|  486|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprote...    27   9.4  
L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro ribonucleopr...    27   9.4  
AL021479-8|CAA16325.1|  643|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    27   9.4  

>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 481 FTWFKSLIKISKFAYNVLKTKTYKQFARLQLISQTLFSRVYFDNKLEAGSSIAL 320
           + WF   + I   A NVL    +++F R  L+ +T  S  Y   ++   S   L
Sbjct: 189 YLWFLLYLNIGNLALNVLLLLVHRKFKRRLLLHKTSLSTRYAIEEISQSSKFTL 242


>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 95  VGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFFEFPQPE 217
           V Q  DYNN   K+HE  V A+ +   K+V+E + + P  E
Sbjct: 95  VDQWVDYNNARIKLHEVKV-ADGLQEAKKVEEKWAKAPPVE 134


>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 LFKRVQEVFFEFPQPEQKIKGIAIKDLENGL 262
           LF R+Q+ ++EFP+ E  +     KDL + L
Sbjct: 443 LFHRIQDGYYEFPEEEWGMISEEAKDLVSNL 473


>Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical
           protein R166.5a protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 LFKRVQEVFFEFPQPEQKIKGIAIKDLENGL 262
           LF R+Q+ ++EFP+ E  +     KDL + L
Sbjct: 441 LFHRIQDGYYEFPEEEWGMISEEAKDLVSNL 471


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 130 ESTRAKCGGQRDSFVQEGAGGILRIPSAGAEDQGHRYKGP 249
           E+  A   GQ  +   +G  G    P A A++QG  YK P
Sbjct: 94  ETGPAGVPGQEGAPGNDGKAGQPGAPGADADEQGFHYKAP 133


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 130 ESTRAKCGGQRDSFVQEGAGGILRIPSAGAEDQGHRYKGP 249
           E+  A   GQ  +   +G  G    P A A++QG  YK P
Sbjct: 94  ETGPAGVPGQEGAPGNDGKAGQPGAPGADADEQGFHYKAP 133


>Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23  KMSKYLFICLICAYIST-GHGKTVIVGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFF 199
           KM+  +F   ICA IST    K         Y++ +R +H+ +++   IP   R     F
Sbjct: 135 KMNAMIFTLAICARISTHDTTKKTECPMLNAYSDYIRALHDSALD--LIPEVCRTPTHLF 192

Query: 200 EF 205
           EF
Sbjct: 193 EF 194


>Z68315-1|CAA92669.1|  486|Caenorhabditis elegans Hypothetical
           protein F28C6.1 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 461 NKNLKICLQCIKNKNL*TIRAAST 390
           NKNL ICL+ +KN N    R   T
Sbjct: 349 NKNLDICLRILKNTNKTITRVIKT 372


>U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprotein
           Ro autoantigenhomolog protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23  KMSKYLFICLICAYIST-GHGKTVIVGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFF 199
           KM+  +F   ICA IST    K         Y++ +R +H+ +++   IP   R     F
Sbjct: 135 KMNAMIFTLAICARISTHDTTKKTECPMLNAYSDYIRALHDSALD--LIPEVCRTPTHLF 192

Query: 200 EF 205
           EF
Sbjct: 193 EF 194


>L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro
           ribonucleoprotein autoantigen protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23  KMSKYLFICLICAYIST-GHGKTVIVGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFF 199
           KM+  +F   ICA IST    K         Y++ +R +H+ +++   IP   R     F
Sbjct: 135 KMNAMIFTLAICARISTHDTTKKTECPMLNAYSDYIRALHDSALD--LIPEVCRTPTHLF 192

Query: 200 EF 205
           EF
Sbjct: 193 EF 194


>AL021479-8|CAA16325.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 23  KMSKYLFICLICAYIST-GHGKTVIVGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFF 199
           KM+  +F   ICA IST    K         Y++ +R +H+ +++   IP   R     F
Sbjct: 135 KMNAMIFTLAICARISTHDTTKKTECPMLNAYSDYIRALHDSALD--LIPEVCRTPTHLF 192

Query: 200 EF 205
           EF
Sbjct: 193 EF 194


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 457 KISKFAYNVLKTKTYKQFARLQ-LISQTLFSRVYFDNKLEAGSSIALQFDVDEVKAQSSS 281
           K ++ +Y  +K +    +  +Q L  + L        +L+   S+ LQ  V+ +  + S 
Sbjct: 626 KSTQKSYQEMKAQLEMAYGEIQSLKKENLMIEERTLEELKQTESVELQRLVESINVEGSE 685

Query: 280 GDRRLGQA 257
            +RRLG+A
Sbjct: 686 MERRLGEA 693


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,205
Number of Sequences: 27780
Number of extensions: 211177
Number of successful extensions: 615
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)