Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324D06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical p... 75 2e-14
U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical pr... 54 6e-08
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 33 0.16
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 33 0.16
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 33 0.16
Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical pr... 28 3.5
U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 28 3.5
U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical pr... 27 8.1
AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical
protein F49C12.12 protein.
Length = 95
Score = 75.4 bits (177), Expect = 2e-14
Identities = 41/98 (41%), Positives = 57/98 (58%)
Frame = +3
Query: 69 CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVE 248
C L GPK+S +V+SVWG+I L L+GVF+YI+AV L DL F+ + VI+ +
Sbjct: 5 CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHG---KVPSSVIDAK 61
Query: 249 KGYTLNAQNCWIAALLYLITLVVSGHQFWLNNRSSVSM 362
Y A CWIAA LY +TL+ FW N ++ +
Sbjct: 62 --YNEKATQCWIAAGLYAVTLIA---VFWQNKYNTAQI 94
>U97593-4|AAB52877.2| 93|Caenorhabditis elegans Hypothetical
protein C46G7.1 protein.
Length = 93
Score = 54.0 bits (124), Expect = 6e-08
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 81 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIEVEKGY 257
GP + L L++WG + + ++G +Y ++V L EDLP + K S+ D K Y
Sbjct: 3 GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62
Query: 258 TLNAQNCWIAALLYL 302
NA NCWIA +Y+
Sbjct: 63 QQNAYNCWIACGVYI 77
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 386 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTVLCIQGISFFHFNDEVFDR 219
++TTP++LHT I+ + RYN + +Q R N + Q I + + E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 386 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTVLCIQGISFFHFNDEVFDR 219
++TTP++LHT I+ + RYN + +Q R N + Q I + + E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 386 KITTPSILHTN*GTIIQPKLMSRYNQCNQVQQCR-NPTVLCIQGISFFHFNDEVFDR 219
++TTP++LHT I+ + RYN + +Q R N + Q I + + E+ D+
Sbjct: 539 QVTTPTVLHTGSRVILGEHHVFRYNDPQEARQSRHNLAAIAEQPIDWKYAQQELLDK 595
>Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical
protein W01D2.3 protein.
Length = 243
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 213 PHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVV 317
PHS E E+E+ + ++C+ AL L+TLV+
Sbjct: 81 PHSYELLFREIERVFGRRREHCFYGALGVLLTLVL 115
>U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical
protein C34D10.2 protein.
Length = 675
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 308 CNQVQQCRNPTVLCIQGISF-FHFNDEVFDRMRRIFLIKW 192
C + +QCR P LC QG + F+ N + DR R L K+
Sbjct: 199 CYKTEQCRKPARLCRQGYACPFYHNSK--DRRRPPALYKY 236
>U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical
protein T28D9.4 protein.
Length = 468
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 129 IQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVI 239
+ T++ VF ++ + L + L + KNPPHS+ V+
Sbjct: 388 VMFTIIAVFRFVFIIILFKVLIY--KNPPHSLTTTVL 422
>AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical
protein Y50D4B.7 protein.
Length = 435
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 108 VLSVWGIIQLTLMGVFYYIRAVALLE---DLPFDEKNPPHSIEDFVIEVEKGYTLNAQNC 278
V +V + TL V++ I LLE + FD K+ SIE VI++E + N
Sbjct: 107 VFNVQRVENRTLGAVYFKILIKGLLELWLEWKFDLKSEGKSIEKIVIKMEGIQEIADGNG 166
Query: 279 WIAALLYLITL 311
I A YL+ +
Sbjct: 167 IIKACPYLLNI 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,865,363
Number of Sequences: 27780
Number of extensions: 240736
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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