Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.2  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.2  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   3.9  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   6.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.8  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   6.8  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   6.8  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 205  PKTDPESCQSLFVFRATITNQETADIKD 288
            P T+ E CQ+ F F A+I   E   IK+
Sbjct: 1954 PSTNTELCQASFKFLASILPYENVKIKE 1981


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 310 KLQPRHNVKDIVEKLRKDQKASSSKSRYEIVNCNRSIEKDTDNF 441
           K + R ++  IV +L K  + SS     EIVN     E+   NF
Sbjct: 192 KRRERLSISHIVTELAKKDEVSSESGSNEIVNAKLKNEQLDSNF 235


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +1

Query: 88  FLCCILEVFIKNMSSQTVIRVKRRLEDNPHDALVVTCKRPKTDPESCQSLFVFRATITNQ 267
           +L CILE  I     + V+R+    + N   +L++  +    D  +    +    +I N+
Sbjct: 341 YLDCILEKLISIQPFENVVRLVNLQDSNGDTSLLIAARNGAMDCVNSLLSYNANPSIPNR 400

Query: 268 ETADIKDLVSPADFK 312
           +     + +  AD K
Sbjct: 401 QRRTASEYLLEADKK 415


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +1

Query: 142 IRVKRRLEDNPHDALVVTCKRPKTDPESCQSLFVFRATITNQETADIKDLVSPADF--KL 315
           I+ ++RL  +P    +  C  PK+DPE  Q L   R     +E  ++++ +  A+   K+
Sbjct: 156 IKRQKRLFKSP----ISNCLNPKSDPEITQLL--SRRLKLEKEVRNLQEQLITAETARKV 209

Query: 316 QPRHNVKDIVEKLRKDQKAS 375
           + ++  KD+   ++K + A+
Sbjct: 210 EAKNEDKDLQTLIQKWKNAA 229


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 LQPISNCNRDIMSRILLKS 352
           L PIS+ N D+M+R+  KS
Sbjct: 409 LSPISSANNDVMARLQPKS 427


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 266 RKQLISKIWCLQPISNCNRDIMSRILLKS 352
           + Q++  ++ L PIS  +RD+ S +L +S
Sbjct: 93  KSQILYFLYLLSPISQSSRDVSSHLLDES 121


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 425 FSMLRLQLTIS*RLLLEEAFWSFRSFSTI 339
           FS+LRL   +  +L+   +FWS R FST+
Sbjct: 283 FSLLRLSGPLGPKLM---SFWSSRRFSTL 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,728
Number of Sequences: 5004
Number of extensions: 36557
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)