Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900...    31   0.74 
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   4.0  
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312...    28   4.0  
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    28   4.0  
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    27   6.9  
01_05_0535 - 23001864-23005052                                         27   9.1  

>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
            9004647-9004786,9004871-9005282,9006399-9006638
          Length = 1222

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 32/110 (29%), Positives = 49/110 (44%)
 Frame = +1

Query: 112  FIKNMSSQTVIRVKRRLEDNPHDALVVTCKRPKTDPESCQSLFVFRATITNQETADIKDL 291
            F   M   T++R+K R   NP +  VV  + PKTD          + T T+QE       
Sbjct: 882  FQPRMEQCTMVRIKYR--PNPQNIQVVDVEPPKTDSLEPLLEDAGKITCTSQEARTAGS- 938

Query: 292  VSPADFKLQPRHNVKDIVEKLRKDQKASSSKSRYEIVNCNRSIEKDTDNF 441
               A F    R  +K+ VE+  K+ ++ +S + ++I   NR  EK    F
Sbjct: 939  -DEAIF----RTEIKEGVEEEAKNARSITSGNGWKIHELNRK-EKGISGF 982


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = -3

Query: 348  FNNILDIMSRLQFEIGWRHQIFDISCFLIGDSGSKYKQGLA*FRVGLRPFTCNNQSI 178
            F +IL++ ++L+ ++ +   ++D     I +SG KY   L   RVG R    N++S+
Sbjct: 1166 FIDILEV-NKLRRQLLFLCYLWDQRLIFIANSGGKYCDTLGGLRVGSRSSDSNDKSV 1221


>05_05_0315 -
           24030695-24030787,24030896-24030995,24031120-24031247,
           24031350-24031517,24031626-24031741,24031773-24031896,
           24032085-24032254,24032255-24032999
          Length = 547

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 277 DIKDLVSPADFKLQPRHNVKDIVEKLRKDQKASSSKSRYEIV 402
           +IKD++S  D     R N  + V  +RK    ++ K R ++V
Sbjct: 505 EIKDIISEVDADNDGRINYTEFVAMMRKGDPEANPKKRRDVV 546


>01_06_0366 -
           28779899-28780543,28780813-28781076,28781165-28781431,
           28781546-28781774,28781868-28781985,28782229-28782486,
           28782585-28782858,28782950-28783475,28784289-28784527,
           28784626-28784847,28784912-28784914,28785124-28785299,
           28786147-28786201,28786288-28786557
          Length = 1181

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = +1

Query: 115 IKNMSSQTVIRVKRRLEDNPHDALVVTCKRPKTDPESCQSLFVFRATITNQETADIKDLV 294
           ++N+   TV+R  + +E  PHDALV        DP+   S  +        E   + D  
Sbjct: 571 VRNVDCITVVRKGKIVEQGPHDALV-------KDPDGAYSQLIRLQETHRDERHKLPDSR 623

Query: 295 SPADFKLQPRHNVKDIVEK 351
           S +      R   KD + K
Sbjct: 624 SKSTSLSFRRSRTKDFLSK 642


>03_02_0400 -
           8135283-8135490,8136047-8136213,8136289-8136477,
           8136560-8136655,8136746-8136874,8136947-8137123,
           8137256-8137366,8138592-8138792,8139022-8139186,
           8139293-8139527,8139618-8139745,8139833-8139928,
           8140017-8140112,8140252-8140325,8140393-8140462,
           8140556-8140665,8140753-8140906,8141040-8141155,
           8141259-8141379,8141464-8141641,8142331-8142489,
           8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 100 ILEVFIKNMSSQTVIRVKRRLEDNPHDALVVTCKRPKTDPESCQSL 237
           IL   ++N  S++++ VK R+ D P D   V      T+   C+SL
Sbjct: 704 ILGKILQNGDSRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSL 749


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 79  FIVFLCCILEVFIKNMSSQT-VIRVKRRL-EDNPHDALVVTCKRPKTDPESCQSLF 240
           F+ FL  +  + +  +  Q   + +K  + EDN  D  +++C     D +SC+ LF
Sbjct: 589 FVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLF 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,240
Number of Sequences: 37544
Number of extensions: 203794
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)