Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324D04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 87 1e-18
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 59 3e-10
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 0.73
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 3.0
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 5.2
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 25 6.8
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.0
>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 87.0 bits (206), Expect = 1e-18
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Frame = +1
Query: 262 PFTLPTNRQVSSIPRAMPD---GSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKEMDDI 432
P LPT R++S+IP+ + + G E W+YPSQQMF++AM RK W + P++M I
Sbjct: 42 PTMLPTEREISTIPKVVTESDSGKEEKWIYPSQQMFFDAMKRKNW-----NPHPEDMKTI 96
Query: 433 IRIHNANNEQAWQEVLKWE-ALHAKECGHP 519
+ IHNA NE+AWQ++L+WE +++CG P
Sbjct: 97 VPIHNAVNERAWQDILQWEQGWGSEKCGGP 126
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 59.3 bits (137), Expect = 3e-10
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = +1
Query: 256 DQPFTLPTNRQVSSIPRAMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKEMDDII 435
DQ L T R SSIP+ DG W YPS Q +NAM RKG+R E++ ++
Sbjct: 199 DQVVGLETTRTTSSIPKV--DGKN--WEYPSPQQMYNAMWRKGYRDSGENV-----PIMV 249
Query: 436 RIHNANNEQAWQEVLKWE 489
++HN NE AW E+ WE
Sbjct: 250 QVHNFLNEGAWSEIKAWE 267
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 124 NPPPECPMHNKTEQ 165
NPPP CPMH + +
Sbjct: 83 NPPPGCPMHKASNE 96
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 121 VNPPPECPMHNKTEQKPKVSE 183
V PP CPM N ++ VSE
Sbjct: 119 VQPPATCPMSNSNQKPAGVSE 139
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 272 CLQTDKFPLFLEQCLMAQLNSGFIQVNKCFGMLCCVKAGV 391
CL + F LFLE+ + QL S F +N C ++ A +
Sbjct: 602 CLNSQGFDLFLEKNPIPQLFSIFTSLNHCKSLISSDNAAI 641
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 43 RLT*DIQMGNKVSAEAHVNIKIGEKDVNPPPECPMHNKTEQKPKVSECPVQH 198
R T QMG +S + + + E+D PP+ H K + P PV H
Sbjct: 185 RYTPSNQMGQALSKQRIIKMVTAEQDPMEPPKF-RHKKVPRGPPSPPPPVLH 235
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 85 EAHVNIKIGEK-DVNPPPECPMHNKTEQKPKVSECPVQHGNDINP 216
E +V +I +K ++ P+ M K +KPKVSE H +I+P
Sbjct: 104 EDNVEQEIKQKRSLSESPQESMLEKVSKKPKVSEA---HNEEISP 145
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 264 WLIWCRLLVSRRHHVEWID--IISMLYWTFRNLWLLLRFVMHRALRWRIHIFLSDFYINV 91
WL WC + ++ + V+ + ++++ + F L + + LRW + ++
Sbjct: 283 WLCWCTMYLTHHYFVDLVGGMCLAIICFVFAQKLRLPQLQTGKILRWEYEFVIHGHGLSE 342
Query: 90 SLSRHL 73
S L
Sbjct: 343 KTSNSL 348
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 394 KDEDIKPKEMDDIIRIHNANNEQAWQEVLK 483
KD ++K E+DDI+ + + QE+L+
Sbjct: 352 KDSNLKKSEIDDIVLVGGSTRIPKVQELLE 381
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 140 HSGGGFTSFSPIFILT*ASADTLFPICMSYVSLQK 36
H G G T S +T A+AD FP S V L++
Sbjct: 66 HEGPGATVMSAYVEVTFANADNRFPTGKSEVVLRR 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,680
Number of Sequences: 5004
Number of extensions: 53113
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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