Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587...    28   4.0  
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656...    28   4.0  
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     27   6.9  
05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728     27   6.9  
03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281...    27   9.1  

>02_05_1120 +
           34257504-34258294,34258483-34258571,34258616-34258713,
           34259269-34259292,34259314-34259404,34259761-34259813,
           34259933-34260151
          Length = 454

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +1

Query: 127 PPPECPMHNKTEQKPKVSECPVQHGNDINPFXXXXXXXXXXXXDQPFTLPTNRQVSSIPR 306
           PPP  P +++ +  PK SE     G   NP               P  LP +R++ + P 
Sbjct: 31  PPPPPPPNDRDDASPKPSE-----GEGRNPAASLFQDLRDRLMSTPSHLP-SRRIPTAPP 84

Query: 307 AMPDGSTE 330
             P G+ E
Sbjct: 85  PRPSGNAE 92


>01_06_0772 -
           31864564-31864653,31864733-31864816,31865547-31865603,
           31865700-31865828,31866704-31866790,31866856-31866933,
           31867150-31867306,31868000-31868141,31868835-31868986,
           31869118-31869371,31869819-31869896
          Length = 435

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = -3

Query: 201 SMLYWTFRNLWLLLRFVMHRALRWRIHIFLSDFYINVSLSRHLIPHLYVLRKSSEEEKIS 22
           SML  T+  +W++  FV+       ++I+     I + +++ L     +LRKSSEE+++ 
Sbjct: 49  SMLIRTYSTVWMIGGFVLI-VYMGHLYIWAMVVVIQIFMAKELFN---LLRKSSEEKQLP 104

Query: 21  SCRI 10
             R+
Sbjct: 105 GFRL 108


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 384 AFTQHSIPKHLLTWINPEFS*AIRHCSRNRGNLS 283
           AF Q  I   +  W++ +   A RH S+NR NLS
Sbjct: 532 AFAQLMIKLPVGLWLSSDLFWAARHLSQNRHNLS 565


>05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728
          Length = 477

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 199 HVVLDIPKPLASAPFCYASGTQVEDSHLSLRFL 101
           H   + P+P+ +A FC AS  +V    + +RF+
Sbjct: 41  HTEQEPPEPITTATFCLASPPRVSQLVVPIRFI 73


>03_03_0144 +
           14826797-14827435,14827561-14827771,14827861-14828155,
           14828285-14828674,14829131-14829208,14829296-14829518
          Length = 611

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 70  NKVSAEAHVNIKIGEKDVNPPPECPMHNKTEQKPKVSECPVQHGNDI 210
           NK+S +    I I  K +N    CPM    ++ PKV +C + + ND+
Sbjct: 341 NKISEKD--GIAIWRKRINDK-SCPMK---QENPKVDKCELAYDNDV 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,377
Number of Sequences: 37544
Number of extensions: 366916
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)