Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    30   0.24 
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.56 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   1.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   1.7  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   9.0  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.0  

>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 376 LLCGELNISRNEGCTSISLLRILPQ*SQPRCQEYFC 483
           L+ G+LN  ++  C ++    ILP+  QP C E FC
Sbjct: 158 LITGDLNAGKSTLCNALVHKDILPEDQQP-CTEVFC 192


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
 Frame = -2

Query: 439 SLTMIWMYTLRSVRYLVLHKGGKHVSLVT--YAPFGR---NRSMKVPIEDICCQERRTVA 275
           +LT+I     R++ Y +     +   +VT   +PF +   ++S+ VP +D+      ++ 
Sbjct: 159 TLTLILFLPRRNI-YSISTLPSQRFEIVTGFLSPFNKLYFSKSLIVPRKDVSIVTY-SLQ 216

Query: 274 KVQLPLKVRNRMMHYMLDMRGEF 206
           K  + LK+R+R  +Y+L+  G++
Sbjct: 217 KNPITLKIRDRPFYYLLNANGKY 239


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 288 LS*QQISSMGTFMDRLRPNGA*VTNETCLPPLWRTKYLTERRVYIHIIVKDPAPIITAK 464
           LS  Q   +   + +  P    V  +  L  + +TK  TE     H+I   P P IT K
Sbjct: 735 LSADQCKQLANVLTQASPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPTPQITVK 793


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -2

Query: 274 KVQLPLKVRNRMMHYMLDMRGEFKNPLL 191
           ++  P +  N+M+ YM++ +G+F + +L
Sbjct: 357 QILFPGRTNNQMLRYMMECKGKFSHKML 384


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 467 HLGCDYWGRILNNDMD 420
           HL C YWGR + +D++
Sbjct: 269 HLNCVYWGRKVLSDIN 284


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 284 PSFLTANIFNGNFHGSIATKWSVSDQ*NMLASFVEN*ISHGTKGVHPYHC 433
           PS +  NI++ +    +  K S  +Q   L++  EN I       H Y C
Sbjct: 191 PSIVRTNIYDPSLDDVLKGKGSTPNQKPSLSNLHENNIDQSDSPQHCYCC 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,959
Number of Sequences: 5004
Number of extensions: 39772
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)