Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1048 - 23545060-23546381,23546479-23546554                       31   0.74 
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177...    27   9.1  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    27   9.1  
01_01_0867 - 6773411-6774682,6775008-6775643                           27   9.1  

>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 360 NETCLPPLWRTKYLTERRVYIHIIVKDPAP----IITAKVPRVFLYLFSPKFIFLY 515
           ++T   P WRT++  ER +++ ++ +   P    I++A V + F        +FLY
Sbjct: 229 DDTVATPAWRTRWREERALWLELLARPTEPVRRNIVSALVAKAFQQASGIGSMFLY 284


>02_05_0419 -
           28814754-28816114,28816749-28817435,28817554-28817774,
           28818536-28818750
          Length = 827

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 464 LGCDYWGRILNNDMDVHPSFREIFSSPQRRQACFIGHLRSIWSQSIHESSH*RYLLSGKK 285
           L CD  G +   D ++ P FR+ +S+   R+     H   +  +SI          S KK
Sbjct: 679 LDCDDEGTLAYPDWEMKPDFRK-YSNSDFRKYSNSNHQVKVDKKSISNVRRPSASKSQKK 737

Query: 284 DSGKSTATSQ 255
            S K++ +SQ
Sbjct: 738 QSKKASLSSQ 747


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = -2

Query: 493 ENKYKNTLGTLAVIIGAGSLTMI 425
           ++++K+ LG LAV++G GSL +I
Sbjct: 723 QSEHKSCLGFLAVLLGNGSLEVI 745


>01_01_0867 - 6773411-6774682,6775008-6775643
          Length = 635

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 476 YSWHLGCDYW-GRILNNDMDVHPSFREIF 393
           YS+H GC  W   +LN  +  +P + EI+
Sbjct: 242 YSYHSGCKIWHSMLLNLTLADNPPYTEIY 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,261
Number of Sequences: 37544
Number of extensions: 240922
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)