Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormo...    29   2.7  
Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical...    28   4.7  
U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir relat...    27   6.2  
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 413  PSFREIFSSPQRRQACFIGHLRSIWSQSIHESS 315
            P  +   ++P+ R  C   HL  IW  SIH +S
Sbjct: 1328 PGVKIAIANPETRGQCADSHLGEIWVASIHNAS 1360


>AF022970-8|AAB69901.2|  231|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 118 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 358 PMKHACLLCGELNISRNEGCTS 423
           P+  ACL+CG+ NI R+ G  S
Sbjct: 12  PLVSACLVCGDPNIQRHYGTVS 33


>Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 419 VHPSFREIFSSPQRRQAC--FIGHLRSIWS 336
           + PS R I SSP+R+Q+   F+ ++ ++WS
Sbjct: 291 LRPSGRAILSSPRRKQSLQKFLDYVGTVWS 320


>AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 419 VHPSFREIFSSPQRRQAC--FIGHLRSIWS 336
           + PS R I SSP+R+Q+   F+ ++ ++WS
Sbjct: 291 LRPSGRAILSSPRRKQSLQKFLDYVGTVWS 320


>U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir related
           protein 2.4 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 394 LVLHKGGKHVSLVTYAPFGRNRSMKVPIEDI 302
           L LHK G   +++T    G +R + +P+ED+
Sbjct: 109 LALHKAGYIKTIITQNVDGLDRKVGIPVEDL 139


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 55  PH*VNLQMYQKSDAEIYSIFSLYSIY 132
           PH  +L  +QK+  +IY++F+L+ I+
Sbjct: 483 PHGRHLNYFQKTFLDIYTLFALFYIF 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,447
Number of Sequences: 27780
Number of extensions: 218730
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)