Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 223 DMRGEFKNPLLFDCTAG 173
           D+ G+F++P + DC  G
Sbjct: 334 DLLGDFEHPCVMDCKVG 350


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 223 DMRGEFKNPLLFDCTAG 173
           D+ G+F++P + DC  G
Sbjct: 249 DLLGDFEHPCVMDCKVG 265


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 223 DMRGEFKNPLLFDCTAG 173
           D+ G+F++P + DC  G
Sbjct: 568 DLLGDFEHPCVMDCKVG 584


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 466 TLAVII---GAGSLTMIWMYTLRSVRYLVLHKG 377
           ++AVII   G   +  I   +++ +RY ++H G
Sbjct: 13  SVAVIIRANGINEILKIMAVSMKDIRYCIIHMG 45


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 356 DQ*NMLASFVEN*ISHGTKGVHPYHC 433
           DQ N+  S +    SHG +G  PY C
Sbjct: 72  DQKNLYQSHLR---SHGKEGEDPYRC 94


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 323 ESSH*RYLLSGKKDSGKSTAT 261
           E  H   ++ G  DSGKST T
Sbjct: 4   EKIHINIVVIGHVDSGKSTTT 24


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 323 ESSH*RYLLSGKKDSGKSTAT 261
           E  H   ++ G  DSGKST T
Sbjct: 4   EKIHINIVVIGHVDSGKSTTT 24


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 284 PSFLTANIFNGNFHGSIATKWSVSDQ 361
           P  +  N  +GNF  ++ATK ++  Q
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQ 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,431
Number of Sequences: 438
Number of extensions: 2749
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)