Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    30   1.3  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    28   5.2  
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    27   6.9  
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177...    27   9.1  

>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 200 SGSTNPTSMTVSGQPAALQRRELCRDETALNAKRAACSSN 81
           S +T PTS   SGQ    ++R+ C+++   + KR +C  +
Sbjct: 430 SQATMPTSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKS 469


>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 7    CFNFIYNISTSTLRCPPANHIIQNILDE 90
            C+  +   S    RCP  NH+++N+L E
Sbjct: 1907 CWETVSGDSDGVGRCPQPNHVLENVLLE 1934


>05_04_0256 -
           19465636-19466709,19467649-19467765,19468168-19468279,
           19469019-19469167,19469378-19469449,19469544-19469609,
           19471945-19472073,19474539-19474647,19475225-19475304,
           19475408-19475533,19475607-19475657,19475738-19475920,
           19476019-19476105,19476184-19476294,19476692-19476796,
           19477513-19477678,19477769-19477941,19478022-19478094,
           19479472-19479655,19479759-19480203
          Length = 1203

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 376 LMLSQWMSLSAGTPARLAAETKS*VNTAGVALARRPVRC 260
           L LS  + L++  P  L  E    VNT+ +ALARR + C
Sbjct: 460 LFLSCSLILTSVIPPELPMELSIAVNTSLIALARRGIFC 498


>09_04_0719 +
           19716536-19716857,19716949-19717101,19717493-19717707,
           19717785-19717855,19717998-19718157,19718598-19718790,
           19718936-19719091,19719229-19719317,19719602-19719695,
           19719870-19720039
          Length = 540

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = +2

Query: 230 AQRPRGSHTPTPDRASCQCDPGCVYLRFSFGREPRRCARGQRHPLTKHQHSLRA 391
           A  P  SH P+   +S       V LRFS  R+P R  RGQR PL    H+LR+
Sbjct: 7   ASAPNPSHAPSSS-SSLSASYSRV-LRFSV-RDPWRRRRGQRLPL----HALRS 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,970,214
Number of Sequences: 37544
Number of extensions: 248400
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)