Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    30   0.24 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   1.7  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.9  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   3.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   3.9  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   5.2  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   5.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.8  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   6.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   6.8  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.0  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   9.0  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 65  STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPK 166
           S+STP PAS   PP    ++++K   R+   +P+
Sbjct: 619 SSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = +1

Query: 223 NDCQRFYV--CLNGVEPRDLGCQVGEVYNEESQK----CDAPENVR---GCEDWYKDSEE 375
           N C++  +  C+N      L C  GE+YN+ES K    C   E V     C   +K++EE
Sbjct: 209 NQCEKLVINACINPTTAT-LDCVNGELYNDESAKELFRCIIKECVDIFFKCIPLFKNNEE 267

Query: 376 A 378
           A
Sbjct: 268 A 268


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 180 INQLLFGALEAVLCFFLLFVTSLSSG 103
           I       LE +LCFFL++ T+ S G
Sbjct: 47  IRDSFLSQLENILCFFLVYRTTYSFG 72


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 375 FLRVL-VPVLASANVLRRIAFLALFVINLSDL 283
           FL+++  P+L++  VLR I F A+  +N   L
Sbjct: 583 FLKIISFPLLSNDKVLREIEFFAIHEVNFRSL 614


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 98  IPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 190
           +PPE +++  + +KQ+      K SWL  +D
Sbjct: 162 LPPEHRNIWFDMEKQKKEELKNKHSWLYNED 192


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 371 SESLYQSSHPRTFSGASHFWLSSL*TSPTWQPRSR 267
           ++ L +S HP + SG S+ +++S      WQ R R
Sbjct: 728 NDKLIKSIHPGSLSGISNSFVNSKHPIEQWQSRLR 762


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 183 GINQLLFGALEAVLCFFLLFVTSLSSGGIGPDAG 82
           GI    +GA   +L F   F  S+   G  PDAG
Sbjct: 480 GIYGACYGAFIIILVFITEFYVSIFPIGASPDAG 513


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 62  TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 172
           TSTSTP  A+ P P     V   K +  +++ A  +S
Sbjct: 77  TSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTS 113


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 65   STSTPVPAS-GPIPPEDKDVTNNKKKQRTASSAPKS 169
            S+STP  +S    PPED D    K+  R A++  K+
Sbjct: 1414 SSSTPKASSTNAEPPEDSDSPIRKRPTRRAAATVKT 1449


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 351 LASANVLRRIAFLALFVINLSDLAA-EVTGLDTVQAYVETLA 229
           L +  +LR +  + LF + +S LA  E T    +QAY+E LA
Sbjct: 432 LVTPPLLRILTHIILF-LKISGLAVDEYTSDSIIQAYIELLA 472


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 56  AFTSTSTPVPASGPIPPEDKD 118
           A  + STP P   P+PP  +D
Sbjct: 911 ATETISTPAPVKPPVPPSRRD 931


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 285 LAAEVTGLDTVQAYVETLAVVGVGELGVSDD 193
           +  E+TG+D V A +   A   + E+G++ D
Sbjct: 333 ITEEITGVDIVSAQLHVAAGFTLPEIGLTQD 363


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 97  DSAGRQGCNEQQKKTKDGFECPKEQLVDAQGQIVAHPKFPHP 222
           D++  +  +  +  TKD  +   E +V+ + +    P F HP
Sbjct: 248 DNSSEENKDTNEPSTKDAEKTVPEDVVNLRSEQKLQPSFGHP 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,093
Number of Sequences: 5004
Number of extensions: 38400
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)