Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 39 0.002
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 38 0.003
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 33 0.16
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 33 0.16
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 33 0.16
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 31 0.50
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.0
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 28 3.5
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 3.5
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 3.5
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 3.5
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 3.5
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 28 3.5
Z98877-10|CAB63406.1| 314|Caenorhabditis elegans Hypothetical p... 28 4.7
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defecti... 28 4.7
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 28 4.7
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 28 4.7
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 27 8.1
U58746-6|AAB00626.2| 378|Caenorhabditis elegans Hypothetical pr... 27 8.1
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 27 8.1
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 27 8.1
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 27 8.1
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 27 8.1
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 27 8.1
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 48.0 bits (109), Expect = 4e-06
Identities = 33/117 (28%), Positives = 55/117 (47%)
Frame = +1
Query: 1 NIFYNCIEGEATEVKCTAGLHFDEYSGTCVWPDSAGRQGCNEQQKKTKDGFECPKEQLVD 180
N+F++C EG A C A L F+ +C WP + C+E+ +K ++ C
Sbjct: 192 NVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNV--MDCSEKSEKPQN---C------- 239
Query: 181 AQGQIVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCE 351
G++ + F F C NG+ P + C G +++E++Q CD NV C+
Sbjct: 240 --GEVDGY--FSFGRCSSSFSACTNGI-PIVMFCPDGLMFSEKNQMCDYEWNVDECD 291
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 223 NDCQR-FYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCED 354
++C F+ C G+ R C V+N CD P+NV C +
Sbjct: 188 SECSNVFFSCSEGIAHRR-NCPANLVFNPAISSCDWPKNVMDCSE 231
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 235 RFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAPG 387
RF C++G E R + C VY++ + CD NV C + +++E + G
Sbjct: 41 RFLACVSG-EARYMDCPEDLVYHKNLEFCDWRHNVFECGEEGEENEFSGDG 90
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Frame = +1
Query: 7 FYNCIEGEATEVKCTAGLHFDEYSGTCVWPDSA---GRQGCNEQQKKTKDGFECPKEQLV 177
F C+ GEA + C L + + C W + G +G + G E++
Sbjct: 42 FLACVSGEARYMDCPEDLVYHKNLEFCDWRHNVFECGEEGEENEFSGDGSGESSGDEEIT 101
Query: 178 --DAQGQIVAHPKFPH-----------PNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQK 318
D+ G+ + C Y+ N PR L C +Y+ ++K
Sbjct: 102 FGDSSGESSGDELLENVCESLKDGVYSSGTCSSSYIICNSGSPRFLSCSTPLIYDPTNKK 161
Query: 319 C 321
C
Sbjct: 162 C 162
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 226 DCQ-RFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGC 348
DC R C NG E C V+NE S CD PE C
Sbjct: 321 DCTPRVLSCQNGRE-NIFECPPSLVFNENSLICDYPETSLKC 361
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 39.1 bits (87), Expect = 0.002
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = +1
Query: 16 CIEGEATE-VKCTAGLHFDEYSGTCVWPDSAGRQGCNEQQKKTKDGFECPKEQLVDAQGQ 192
C GE E C + L F++ +G C +P GC E +T EC + G
Sbjct: 1202 CFGGELFEHPSCQSSLAFNQLTGKCDYPQKVS--GC-ENHGQTNG--ECSEH------GS 1250
Query: 193 IVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSE 372
+A N+C+ FY C+ G + + C G V+N CD P V C DS
Sbjct: 1251 FIADA-----NNCEVFYRCVWGRKVV-MTCPSGTVFNPLLSVCDWPSAVPSCSGQASDSN 1304
Query: 373 EA 378
+
Sbjct: 1305 SS 1306
Score = 36.7 bits (81), Expect = 0.010
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 211 FPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCED 354
+ + DC C G CQ +N+ + KCD P+ V GCE+
Sbjct: 1190 YRNERDCSAILQCFGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGCEN 1237
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +1
Query: 4 IFYNCIEGEATEVKCTAGLHFDEYSGTCVWPDSAGRQGCNEQQKKTKDGF 153
+FY C+ G + C +G F+ C WP + C+ Q + +
Sbjct: 1260 VFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAV--PSCSGQASDSNSSY 1307
Score = 30.3 bits (65), Expect = 0.87
Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Frame = +1
Query: 1 NIFYNCIEGEATEVKCTAGLHFDEYSGTCVWPDSAGRQGCNEQQKKTKDGFECPKEQLVD 180
N F +C+ G A KC L F+E + C +Q + +DG E E +
Sbjct: 113 NQFISCVAGGAYMAKCPDSLVFNERTQDCRESCDEVKQDTTTAPQVYEDGEEGYGEASGE 172
Query: 181 AQGQIVAHPKFPHPN----DCQR-------------FYVCLNGVEPRDLGCQVGEVYNEE 309
G P P+ DC FY C N + + C G V+N
Sbjct: 173 IAGDYERQPSNEQPDSIDFDCNGLEDGNYADGCNDVFYSCSNNMVFQRY-CPPGTVFNIN 231
Query: 310 SQKCD 324
Q CD
Sbjct: 232 QQSCD 236
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +1
Query: 217 HPNDCQRFY-VCLNGVEPRDLGCQVGEVYNEESQKCDAPENV--RGCED 354
H C FY VC +G CQ+GE Y+ Q C + R C++
Sbjct: 894 HGTGCSSFYFVCSHGRLISSGNCQLGEGYDPSVQGCRTFSEIPARACDE 942
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 226 DCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAP 384
DC+++ + + C G Y+ KCD ENV GC + YK + +A P
Sbjct: 700 DCEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVEGCPE-YKPTTDATP 751
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 226 DCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAP 384
DC+ +Y+ N E C G Y++ + +CD E+V C + YK + P
Sbjct: 799 DCEDYYISCNNFETTINRCPAGLFYSKLNNRCDYKEHVEDCPE-YKPTPSTTP 850
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 1 NIFYNCIEGEATEVKCTAGLHFDEYSGTCVWPDSAGRQGCNEQQKKTKDGFECPK 165
++FY C G+ C A L F+ Y G C + S + C Q T + PK
Sbjct: 589 SVFYICANGQVVATTCPANLIFNPYVGECDY--STNVRDCQGYQPTTTPSYSYPK 641
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 238 FYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAPGPKSRS 402
FY+C NG + C ++N +CD NVR C+ + + + PK+ S
Sbjct: 591 FYICANG-QVVATTCPANLIFNPYVGECDYSTNVRDCQGYQPTTTPSYSYPKTTS 644
Score = 31.5 bits (68), Expect = 0.38
Identities = 27/118 (22%), Positives = 49/118 (41%)
Frame = +1
Query: 7 FYNCIEGEATEVKCTAGLHFDEYSGTCVWPDSAGRQGCNEQQKKTKDGFECPKEQLVDAQ 186
+++CI+ + ++ C L F + S CV+P A + C+ + P + +
Sbjct: 971 YFSCIDEQIRKMSCPNSLKFSKESEKCVFPIDA--KECSIATTLDRTPPAVPSD-FCTIR 1027
Query: 187 GQIVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWY 360
+ H K P+ + VC NG C VYN ++Q C+ + C + Y
Sbjct: 1028 SNGLHHLKMCSPH----YIVCDNG-RAFSGTCIAPLVYNGDTQTCNYKSTNKDCGNDY 1080
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 238 FYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAPGPKS 396
F+ C NG R C +Y + CD PE+V+ C + Y SE + PK+
Sbjct: 221 FWQCSNGKLFRKT-CPEKLIYVLDQNLCDFPESVKDCPE-YNGSETSYRAPKT 271
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 211 FPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPE 333
F P+DC +F C+NG+ + C G ++ ++ CD P+
Sbjct: 572 FGVPSDCLKFIRCVNGIS-YNFECPNGLSFHADTMMCDRPD 611
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 DCQ-RFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAA 381
+C+ +F C G+ R + C +YNE CD NV GCE + S E +
Sbjct: 36 ECEPQFLTCSGGIA-RIMDCPADLIYNEPLLICDWRHNVIGCEGSGESSGETS 87
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 238 FYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAPGPKS 396
F C NG + C G ++E + +CD NV C++ + A G +S
Sbjct: 324 FTACTNG-RAIVMFCPAGLKFSESTVRCDYESNVSECQETSGEESGEASGEQS 375
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 HPND-CQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGC 348
HPN C ++ +G R + C V+N CD P +V C
Sbjct: 255 HPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 DCQ-RFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAA 381
+C+ +F C G+ R + C +YNE CD NV GCE + S E +
Sbjct: 36 ECEPQFLTCSGGIA-RIMDCPADLIYNEPLLICDWRHNVIGCEGSGESSGETS 87
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 238 FYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGCEDWYKDSEEAAPGPKS 396
F C NG + C G ++E + +CD NV C++ + A G +S
Sbjct: 324 FTACTNG-RAIVMFCPAGLKFSESTVRCDYESNVSECQETSGEESGEASGEQS 375
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 HPND-CQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVRGC 348
HPN C ++ +G R + C V+N CD P +V C
Sbjct: 255 HPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 154 ECPKEQLVDAQGQIVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQV---GEVYNEESQKCD 324
E +EQL ++VA H ++C++ + G + R + C+V GE+ N ++ C+
Sbjct: 461 EKAREQLRKYGNELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICE 520
Query: 325 APENVR 342
+ +VR
Sbjct: 521 SLASVR 526
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 154 ECPKEQLVDAQGQIVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQV---GEVYNEESQKCD 324
E +EQL ++VA H ++C++ + G + R + C+V GE+ N ++ C+
Sbjct: 795 EKAREQLRKYGNELVARWDIGHWSECRQKTCHVAGYQARGISCKVTFHGEIRNVDNSICE 854
Query: 325 APENVR 342
+ +VR
Sbjct: 855 SLASVR 860
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/97 (21%), Positives = 37/97 (38%)
Frame = +2
Query: 113 KDVTNNKKKQRTASSAPKSSWLMPKDRXXXXXXXXXXXXANVSTYA*TVSSPVTSAAKSE 292
+ + + + RTAS PK+ P N S + + S +++ K
Sbjct: 59 RSASKSATRGRTASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSASTPSASSTSVKRS 118
Query: 293 RFITKRARNAMRLRTFADARTGTRTLRKPHQDPNRDL 403
R +TK R+ ++ AD T + Q R+L
Sbjct: 119 RSVTKTPRDVVKTIEVADDEDEVTTPSRLRQRNVRNL 155
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 62 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWL 178
+++ T AS P+ ++ N K S+PKSSWL
Sbjct: 718 STSGTNAVASVPLLSSSRESKNKSKSSDADVSSPKSSWL 756
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 77 PVPASGPIPPEDKDVTNNKKKQ 142
PVP P+ P +TNNKKK+
Sbjct: 605 PVPPQVPVTPTKPVITNNKKKR 626
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 77 PVPASGPIPPEDKDVTNNKKKQ 142
PVP P+ P +TNNKKK+
Sbjct: 605 PVPPQVPVTPTKPVITNNKKKR 626
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 25 GEATEVKCTAGLHFDEYSGTCVWPDSAGRQG--CNEQQKKTKDGFECPKE 168
G A + C AG+ D +G C AG QG C++ G++C ++
Sbjct: 761 GCAMKCSCPAGIRCDPVTGDCTKKCPAGYQGNLCDQPCPAGYFGYDCEQK 810
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 25 GEATEVKCTAGLHFDEYSGTCVWPDSAGRQG--CNEQQKKTKDGFECPKE 168
G A + C AG+ D +G C AG QG C++ G++C ++
Sbjct: 761 GCAMKCSCPAGIRCDPVTGDCTKKCPAGYQGNLCDQPCPAGYFGYDCEQK 810
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 62 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWL 178
+++ T AS P+ ++ N K S+PKSSWL
Sbjct: 718 STSGTNAVASVPLLSSSRESKNKSKSSDADVSSPKSSWL 756
>Z98877-10|CAB63406.1| 314|Caenorhabditis elegans Hypothetical
protein Y69H2.9 protein.
Length = 314
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 341 ADARTGTRTLRKPHQDPNRDLKPYSDTTLYY 433
ADA T + T H +PNRD K + D+ LY+
Sbjct: 17 ADASTPSSTCDVAHLNPNRDRK-FIDSQLYF 46
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
protein W08D2.5 protein.
Length = 1256
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 387 SWCGFLRVLVPVLASANVLRRIAFLALFVINLS 289
S CGF+ ++ ++ N LRRI +L +I ++
Sbjct: 388 SGCGFIYTIIVMIMRGNTLRRIIVRSLDIITIT 420
>U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defective
protein 9, isoforma protein.
Length = 357
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 65 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 190
+T T P S P P + K++ S P+ L+PKD
Sbjct: 120 ATHTVTPRSRPTPKDIKEILETIAPSVGVSETPEEMCLLPKD 161
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 65 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 190
+T T P S P P + K++ S P+ L+PKD
Sbjct: 215 ATHTVTPRSRPTPKDIKEILETIAPSVGVSETPEEMCLLPKD 256
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 65 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 190
+T T P S P P + K++ S P+ L+PKD
Sbjct: 198 ATHTVTPRSRPTPKDIKEILETIAPSVGVSETPEEMCLLPKD 239
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 304 EESQKCDA-PENVRGCEDWYKDSEEAAPGPKSR 399
E+ K D PE + G ED Y+D EE P P +R
Sbjct: 214 EKRPKIDVKPEEIEG-EDEYEDVEEPIPPPNTR 245
>Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical
protein M199.5 protein.
Length = 660
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 368 LRKPHQDPNRDLKPYSDTTLYYN 436
+R P +PNR PYS+ ++Y+
Sbjct: 16 IRYPSYEPNRQYGPYSNDVIHYD 38
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 56 AFTSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 172
A +STST P++ P P DV K A+++ ++S
Sbjct: 97 ATSSTSTTAPSTAPAPTSTTDVLELKPTTAPATNSAETS 135
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 56 AFTSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 172
A +STST P++ P P DV K A+++ ++S
Sbjct: 97 ATSSTSTTAPSTAPAPTSTTDVLELKPTTAPATNSAETS 135
>U58746-6|AAB00626.2| 378|Caenorhabditis elegans Hypothetical
protein R05G6.9 protein.
Length = 378
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/72 (29%), Positives = 26/72 (36%)
Frame = +1
Query: 76 SGTCVWPDSAGRQGCNEQQKKTKDGFECPKEQLVDAQGQIVAHPKFPHPNDCQRFYVCLN 255
+G CV A CN K GF+C E A F P+DC +CL
Sbjct: 136 NGVCVGSKKAPLCLCN----LGKTGFKCESEISGLLNMDPSAPITFCSPSDCNNKGLCLG 191
Query: 256 GVEPRDLGCQVG 291
CQ+G
Sbjct: 192 TKNSFSCACQIG 203
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 56 AFTSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 172
A +STST P++ P P DV K A+++ ++S
Sbjct: 97 ATSSTSTTAPSTAPAPTSTTDVLELKPTTAPATNSAETS 135
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 56 AFTSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 172
A +STST P++ P P DV K A+++ ++S
Sbjct: 97 ATSSTSTTAPSTAPAPTSTTDVLELKPTTAPATNSAETS 135
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 13 NCIEGEATEVKCTAGLHFDEYSGTC 87
N +EG +EVKC DE+ TC
Sbjct: 105 NKLEGHESEVKCAVFSKSDEFLATC 129
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 202 HPKFPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVR 342
H KFP DC +F V + G DLG + Y ++ +K + +R
Sbjct: 670 HRKFPQDLDCLKFLVRIAG----DLGMTEYKEYKDKLEKAEKINQLR 712
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 71 STPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPK 187
+TP P PP ++V +K++R + K LMP+
Sbjct: 407 TTPAEEVLPAPPPQENVWAKRKEERESLEREKEKSLMPR 445
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 202 HPKFPHPNDCQRFYVCLNGVEPRDLGCQVGEVYNEESQKCDAPENVR 342
H KFP DC +F V + G DLG + Y ++ +K + +R
Sbjct: 670 HRKFPQDLDCLKFLVRIAG----DLGMTEYKEYKDKLEKAEKINQLR 712
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,535
Number of Sequences: 27780
Number of extensions: 233359
Number of successful extensions: 1032
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -