Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.15 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.8  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +2

Query: 77  PVPASGPIPPEDKDVTN-----NKKKQRTASSAPKSSWLMPKDR 193
           P P    + PE K++ N     N  K+ TAS A K  W+  ++R
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRER 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 104 AESGQTQVPEYSSK*RPAVHLTSVASP 24
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 NGVEPRDLGCQVGEV 297
           NG++P  LGC V  +
Sbjct: 211 NGIDPLPLGCPVNAI 225


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 390 GSWCGFLRVLVPVL 349
           G W G L+ LVP+L
Sbjct: 290 GHWSGCLQFLVPML 303


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 390 GSWCGFLRVLVPVL 349
           G W G L+ LVP+L
Sbjct: 258 GHWSGCLQFLVPML 271


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 VSSPVTSAAKSERFITKRARNA 322
           +S  V SA K  RFI +  +NA
Sbjct: 443 LSPDVISALKGVRFIAQHIKNA 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,313
Number of Sequences: 438
Number of extensions: 2892
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)