Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   1.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   5.2  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    25   5.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   9.0  

>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 126  QQE*AQHR*RRCWLRELLPWAVSGQLSEQLPARSRGISERSGIPGSVRPGG-TARGSSRL 302
            Q+E A+   R+  +++     +S +L+E+  AR   I   S  PG+ R GG +A G SR 
Sbjct: 835  QREMAEKLERQRRIQQERDEEISRKLAEKAAARRANIGASSPSPGAWRRGGASAGGVSRD 894

Query: 303  PP 308
             P
Sbjct: 895  SP 896


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 292 EPRAVPPGRTDPGIPDRSDIPLDLAGSCSDNCP 194
           +P  +PP R   GIP  S+ P+D   S S   P
Sbjct: 118 KPHPLPPKRVSLGIPSISNPPVDTVISDSPTSP 150


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 112 LNQPHNQQQMYKQVQEQIFSSP 47
           LNQP  QQQ  +Q Q Q  ++P
Sbjct: 149 LNQPPQQQQQQQQQQHQQHATP 170


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 496 PRNSSE-DPHSSSWRSTDILHKSWRTGTCSPFCDIHSREKKDYRSSRNHG 350
           P +SSE  P +S ++    +  +  + +  PF +  S EK+D   S+++G
Sbjct: 117 PSSSSEFPPKNSKYQLPGSMPNTGASSSQDPFTNSQSTEKEDAMYSKDNG 166


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 262 DPGIPDRSDIPLDLAGSCSDNCPD 191
           DP  P + D  +   G+C D CP+
Sbjct: 91  DPTKPRQLDEAVTFVGTCPDMCPE 114


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 443 SSQELAYRNLQSVLRHP*PGKE 378
           S Q +AYR +  +LR P PG+E
Sbjct: 300 SKQAVAYRQMSLLLRRP-PGRE 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,301
Number of Sequences: 5004
Number of extensions: 34569
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)