Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647     32   0.32 
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164...    29   1.7  
10_08_0801 + 20670795-20671730                                         29   2.3  
06_01_0664 + 4850445-4850879,4853155-4854186                           29   3.0  
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70...    28   4.0  
01_06_0775 - 31909855-31909897,31909984-31910055,31910400-319104...    28   4.0  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   6.9  
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20...    27   9.1  

>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
          Length = 263

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 310 CDSSVYSYCSRKQAHDSCCCDNPSFPGYGCRKTDCKFLYANSCEEYQLISNCCCVD 477
           C+  V+S+CS +     CC    S+  Y    +  KFL+ +         +CCC D
Sbjct: 213 CEDQVHSWCSIETGEIGCCVRCMSYEIYLVHPSTDKFLFGDES------LHCCCAD 262


>06_01_0218 +
           1647624-1647757,1648044-1648112,1648493-1648549,
           1648768-1648934,1649661-1649716,1650319-1650490,
           1650747-1650810,1651037-1651119,1651243-1651334,
           1652028-1652134,1652398-1652461,1652630-1652770
          Length = 401

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +1

Query: 304 PLCDSSVYSYCSRKQAHDSCCCDNPSFPGYGCRKTDCKFLYANSCEEYQLISNCCCVDLQ 483
           P   S++Y  CS K      CC  P+      +++   +L A S   Y L+ N  C+   
Sbjct: 125 PAIYSTIYCICSTKSICSGTCCKGPNIMAIAGQESSQNYLRAVSL-FYFLMHNTECIHAS 183

Query: 484 KNSVD 498
             S D
Sbjct: 184 VASHD 188


>10_08_0801 + 20670795-20671730
          Length = 311

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 511 PRQACPRNSSEDPHSSSWRSTDILHKSWRTGTCSPFCDIHSREKK 377
           PR   P + +  P S  W  TD+L +  RT +   +C+    E+K
Sbjct: 226 PRTPTPYSPARTPASPMWLVTDLLRRR-RTVSFEDYCNEEEEERK 269


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = +1

Query: 301 CPLCDSSVYSYCSRKQAHDSCCCDNPSF--PGYGCRKTDCKFLYANSC 438
           C  C   + +Y         C CD   F   GY C    CK++    C
Sbjct: 9   CGKCSRMMENYDHTNSNSRDCTCDKCHFLLAGYSCPYASCKYMIHKVC 56


>04_01_0070 -
           706640-706747,707221-707307,707397-707502,707585-707693,
           707766-708145,708508-708601,709351-709475,709633-709674,
           710822-710892,710979-711060,711157-711277,712404-712713
          Length = 544

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 322 LTNHIGGNRDEPRAVPPGRTDPGIPDRSD 236
           L + I G   EP AVP   T P +P  +D
Sbjct: 343 LNDSIQGEAQEPTAVPVENTQPSVPQPTD 371


>01_06_0775 -
           31909855-31909897,31909984-31910055,31910400-31910488,
           31911298-31911522
          Length = 142

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 282 RSRRAVLTRVSRTARIYPWTLRVVARIIARIL 187
           R RR   T  +  AR + WTLR + R +AR L
Sbjct: 46  RQRRRTRTCATMAARPWTWTLRRMQRRVARCL 77


>06_01_1128 +
           9300144-9300273,9300340-9300472,9300585-9300656,
           9300783-9300926,9301453-9301524,9301584-9301677,
           9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -2

Query: 493 RNSSEDPHS--SSWRSTDILHKSWRTGTCSP 407
           +N  EDPH    SW    +   SW   TCSP
Sbjct: 51  KNLLEDPHGVLKSWDQNSVDPCSWALITCSP 81


>01_01_0027 -
           205450-206029,206706-207276,207408-207836,208438-208525
          Length = 555

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 204 SEQLPARSRGISERSGIPGSVRPGGTARG 290
           SE+L + ++  SE + +PG+ + GGT  G
Sbjct: 240 SEELRSITKNFSEGNRLPGNAKTGGTYSG 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,007
Number of Sequences: 37544
Number of extensions: 255196
Number of successful extensions: 1040
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)