Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    92   4e-20
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    37   0.002
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    36   0.005
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   0.56 
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   6.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.8  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   9.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.0  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
 Frame = +2

Query: 2   LRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPI 181
           +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA  +
Sbjct: 17  IRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHACVL 76

Query: 182 LYAAWAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSLGQGLAVAAGMAY 349
            Y      G    +++LK  R++ S   GHP    P LN ++ G G LGQG+A A G+A 
Sbjct: 77  QYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPLGQGIASAVGLA- 134

Query: 350 VGKYFDQAPYR----------VYCLVGDGEAAEGSIWESLHFASHYKLDNL 472
           +GK    A Y            +C +GDG   EG   E+   A H KL NL
Sbjct: 135 IGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVSSEACSLAGHLKLSNL 185


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
 Frame = +2

Query: 149 FILSKGHAAP-ILYAAWAEAGLFPL--------DELKNLRKLDSDLEGHPTPRLNFVDVG 301
           F++  GH AP IL A + E  L P         + L NL    S   G P+  +N    G
Sbjct: 125 FVVGPGHGAPAILSALFLEDSLGPFYPRYQFTKEGLNNLINTFSLPGGFPS-HVNAEVPG 183

Query: 302 TGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLD 466
               G  L  A  ++Y G   D+    V C+VGDGEA  G    S H  +H  LD
Sbjct: 184 AIHEGGELGYALSVSY-GAVLDRPDLIVTCVVGDGEAETGPTATSWH--AHKFLD 235


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 299 GTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKL 463
           G G +G  + + AG+ +  KY ++ P   + L GDG + +G  +E+ + A  + L
Sbjct: 180 GNGIVGAQIPLGAGIGFAQKYLEK-PTTTFALYGDGASNQGQAFEAFNMAKLWGL 233


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 511 SDCPRRLTSKMTXQVVQLVVAGEVQRLPD-AALGRLSVAHQAIHPV 377
           SD P+  + K+  ++++ ++AGEV ++ D + L    V    IH V
Sbjct: 609 SDLPKTRSGKIMRRILRKILAGEVDQIGDLSTLADPKVVEHIIHAV 654


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 420 PSAASPSPTRQYTL*GAWSKY 358
           PS  + SPT   T+  +WSKY
Sbjct: 245 PSDPNSSPTSSVTVSSSWSKY 265


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 MRYKISAPRDASADRFILSKGHAAPIL 184
           +R  I AP DASA  F +  GH    L
Sbjct: 295 IRTIIEAPEDASATYFAIRLGHTVAFL 321


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 359 YFDQAPYRVYCLVGDGEAAEGSIWESL 439
           +FD +P  +  +V   EA EG ++ESL
Sbjct: 401 HFDISPKNIGKVVQPTEAIEGDVYESL 427


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 258 WRATPPRDSTSWTSAPAPWAR 320
           W A     S+S TS+PAPWA+
Sbjct: 409 WAAASTSVSSS-TSSPAPWAK 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,794
Number of Sequences: 5004
Number of extensions: 32949
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)